KEGG   Trichoderma asperellum: 36616600
Entry
36616600          CDS       T10296                                 
Symbol
YSH1, TrAFT101_005117
Name
(RefSeq) endoribonuclease ysh1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tasp  Trichoderma asperellum
Pathway
tasp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tasp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    36616600 (YSH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tasp03021]
    36616600 (YSH1)
   03019 Messenger RNA biogenesis [BR:tasp03019]
    36616600 (YSH1)
Transcription machinery [BR:tasp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     36616600 (YSH1)
Messenger RNA biogenesis [BR:tasp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     36616600 (YSH1)
    U7-dependent histone pre-mRNA processing factors
     36616600 (YSH1)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 RMMBL Lactamase_B_2 Lactamase_B_3
Other DBs
NCBI-GeneID: 36616600
NCBI-ProteinID: XP_024759519
LinkDB
Position
3:join(1598533..1598685,1598753..1598850,1599228..1600356,1600440..1601672)
AA seq 870 aa
MASKRKASAMNAAAQDEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTASNSATQLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMF
LIEIAGLNIFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRVEREQALMK
SITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEFQKFPIYYASNLARKCMVIYQT
YVGAMNDNIKRLFRERMAEAEANGDGAGKNGPWDFKYIRSLKNLDRFDDVGGCVMLASPG
MLQNGVSRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIQAVMSRSIAGARRGPG
ADSEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSL
NASKTTKVKVYSPRNCEELRIPFKADKTAKVVGKLASISPPQDIDASAPLVTGVLVQNDF
KLSLMAPEDLREYAGLNTTTITCKQRLTLSAAGVDLVRWALEGTFGAVEELPEMRRIKNS
KQDGDMDGEDETMAEDADEEVANLVAAYLVMGCVSVRYRTNGEVELEWEGNMLNDGIADS
VMAVLFSVESSPAAVKRSSANSKHSHSHGEPDDRIYAAQPDSKNPHAHVSPADRLERLMW
FLEAQFGADNVGPVEEPKLLPLPAASPKEEEQKKEGDEDDAMKAEKAEEEEQKHANGTDT
KAEEDMDLDDKKVAEDEDEAKQQLQERQFKEIARLHKLGIPVPGISIKVDKMTATIWLED
LEVECNNKVFADRVRAVVERAVEVTAPLWG
NT seq 2613 nt   +upstreamnt  +downstreamnt
atggcatccaagcgcaaagcgtctgcgatgaatgcagctgcccaggatgagcccgtagat
ccatccgacgagctcatgttcctctgtcttggaggcggcaatgaagttggacggtcgtgc
catattatccaatacaagggcaaaacagtgatgctcgatgccggccagcatcctgcatac
gatggcctcgcagcccttccattctatgatgacttcgatctcagcaccgtagatgtgctc
ctcatcagccatttccacattgatcatgcagcatcgttgccatacgtcctggccaagacc
aattttcgcggccgtgtcttcatgacacacccaaccaaggccatctacaaatggctcatc
caagacagcgtccgtgtaggaaacacggcatcaaactcggcgacccagctctacaccgaa
caagaccacctcaacacctttccacaaatcgaagcgattgactatcacaccactcacact
atttcttccatccgaatcactccttatccggcaggccacgtgctaggagcagccatgttc
ctgatcgagattgccggcctcaacatcttcttcactggcgactattcgcgtgagcaggat
cgacatcttgtctcagcagaggtgcccaaaggactcaagatcgacgttctcatcaccgag
tcaacatatggcatagcgtctcatgtgccgcgtgttgaacgagagcaagctctcatgaag
tccatcacaggaatcctcaacagaggcggccgagcgctgcttccggtatttgccctgggg
cgagcccaggaactcctcctgatcctggacgagtattggggcaagcatcccgagttccaa
aagttccccatctactatgccagtaaccttgccagaaagtgtatggtaatctaccagaca
tatgttggtgccatgaacgacaacattaaacgattattccgagaacgcatggccgaggcc
gaggccaacggtgacggagcaggcaagaacggaccttgggatttcaagtatattcgctct
ctcaaaaacctggatcgctttgacgatgtcggcggctgcgttatgctcgccagcccgggt
atgctccaaaacggagtgagcagagagctctttgaacgctgggctcctagcgagaagaac
ggcgtcatcattactggttacagtgttgaaggtaccatggcccggcagattatgcaagag
ccggatcagatccaagccgtcatgtctcgaagcatagcgggcgctcgacgggggccagga
gcagattcggagaaggtgcttattcctcggcgctgcagtgtccaggagtactctttcgcc
gctcatgttgatggtgtagagaacagagagttcatcgaggaggtcgccgcacctgttgtc
attcttgttcacggcgagcagcacaacatgatgcgcctaaagtctaagctcctttccctc
aacgccagcaaaaccacaaaggtcaaggtctactctccccgtaattgtgaagagctccgc
atcccgttcaaagccgacaagactgccaaagtcgttggtaagctggcttccatctcgcct
ccacaggacattgacgcctccgcacctcttgtaaccggcgtgcttgtccaaaatgacttc
aagctctcactcatggcccccgaggacttgcgtgagtacgccggcctcaacactacgacc
atcacatgcaagcagcgtctcacattaagtgctgcgggcgtggacctagtccgttgggca
ctggaggggacttttggagccgttgaggagctccctgaaatgcgtcgcatcaagaactcc
aagcaggatggagacatggatggcgaagatgagacgatggccgaagatgcagacgaggag
gttgccaatctggtggcagcttaccttgtgatgggctgcgtctccgtacgttatcgcacc
aacggcgaggtggagttggagtgggaaggcaacatgctcaacgacggcatcgctgactcc
gtcatggccgtcttattctccgtggagagctcgcccgccgccgtcaagcgctcctccgcc
aacagcaaacattctcactcccatggcgagcctgatgaccgtatctatgctgcccagccc
gacagcaaaaacccccacgcccatgtctcccctgctgaccgtctcgaacggctcatgtgg
ttcctagaagctcagttcggtgcagacaacgtcggccccgtggaggaacctaagctcctg
ccactacccgcagcatctccgaaagaagaagaacagaagaaagaaggcgacgaagacgac
gccatgaaagcagaaaaagcagaggaggaagaacagaagcatgccaacggcactgataca
aaggcagaagaagacatggaccttgacgacaagaaagtggccgaggatgaagatgaagcc
aaacagcagcttcaggagcggcagttcaaggaaatcgcccgtctacacaaactcggcatc
cctgtccccggaatatccatcaaggtagacaagatgaccgcgacgatatggctagaggat
ctggaagtggaatgcaacaacaaggtgtttgcagacagagtccgcgccgtggtggagcga
gcagttgaagttaccgctccgctgtggggatga

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