KEGG   Trichoderma asperellum: 36617789
Entry
36617789          CDS       T10296                                 
Symbol
LSM4, TrAFT101_001276
Name
(RefSeq) RNA processing protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tasp  Trichoderma asperellum
Pathway
tasp03018  RNA degradation
tasp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tasp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    36617789 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    36617789 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tasp03019]
    36617789 (LSM4)
   03041 Spliceosome [BR:tasp03041]
    36617789 (LSM4)
Messenger RNA biogenesis [BR:tasp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     36617789 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     36617789 (LSM4)
Spliceosome [BR:tasp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    36617789 (LSM4)
SSDB
Motif
Pfam: LSM SpoU_sub_bind SM-ATX
Other DBs
NCBI-GeneID: 36617789
NCBI-ProteinID: XP_024765527
UniProt: A0A6V8QP60
LinkDB
Position
1:complement(join(4084689..4084886,4084957..4085007,4085077..4085217,4085299..4085301))
AA seq 130 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVY
VKGNNIKYLRVPDEIIDQVTEQQKNQQGSGFRGGRGGHQSRGDHGGHGGRGGGDRGRGRG
GRGRGRGRGQ
NT seq 393 nt   +upstreamnt  +downstreamnt
atgcttcccctcggattgctcaatgctgctcagggccaccccatgctggtcgagctgaag
aatggagagaccttaaacggacacttggtcatgtgcgatacatggatgaacctcaccctc
aaagaagtcgtgcagacaagccctgaaggggataaattcatgcgcctcccagaagtctac
gtcaagggaaataacattaaatacctccgtgttcccgacgagatcatcgaccaagtcacc
gagcagcaaaagaaccagcaaggcagcggcttccgtggcggtcgcggcggccaccagtca
agaggtgatcatggtggtcacggtggccgcggaggcggcgaccgagggcgaggccgtgga
ggcagaggtcgcggaaggggacgtgggcagtaa

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