Trichoderma asperellum: 36618852
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Entry
36618852 CDS
T10296
Symbol
RPB2, TrAFT101_002500
Name
(RefSeq) DNA-dependent RNA polymerase II
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tasp Trichoderma asperellum
Pathway
tasp03020
RNA polymerase
tasp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tasp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
36618852 (RPB2)
09124 Replication and repair
03420 Nucleotide excision repair
36618852 (RPB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tasp03021
]
36618852 (RPB2)
03400 DNA repair and recombination proteins [BR:
tasp03400
]
36618852 (RPB2)
Enzymes [BR:
tasp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
36618852 (RPB2)
Transcription machinery [BR:
tasp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
36618852 (RPB2)
DNA repair and recombination proteins [BR:
tasp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
36618852 (RPB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-GeneID:
36618852
NCBI-ProteinID:
XP_024763611
LinkDB
All DBs
Position
2:join(555690..558083,558163..559391,559453..559615)
Genome browser
AA seq
1261 aa
AA seq
DB search
MADYEDDYDYENYGDEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNE
YSTITLDQPNPPSPPGRTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTY
ASPLYIKITKKVSAAVEREVPLHEMDDAQQEQYARTGEHPTKLEWEEEENGEDDNLGKSD
DWKDMVFVGKLPIMVKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSA
ANIVQVFKKAQPSAYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPF
VKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIG
KRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRR
EPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTL
SNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ
LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLR
YPHATKIFVNGVWVGIHQDPKHLVNQVLDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRV
MRPVFTVQQEDDPETGINKGHLVLTKDLVNRLAKEQAEPPEDPSMKLGWEGLIRAGAVEY
LDAEEEETAMICMTPEDLELYRLQKAGIATDEDMGDDPNKRLKTKTNPTTHMYTHCEIHP
SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGT
TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKK
VGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDL
GTRTTMHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHG
QKGTIGVTYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDAT
PFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHA
RARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEI
CGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMYTNRSGASI
R
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgaagacgattacgattatgagaactatggggatgaggatgagggcatc
acgcccgaggattgctggaccgtgatttcctctttcttcgagaccaagggtctcgtatcg
cagcagaccgactcctttgacgagtttactcagacgaccatccaggatctcgttaacgaa
tactccaccatcacactcgatcagcccaatcctccttcgccacctggtcgaacgatagcc
cttcgccgatatgaaatcaaatttggaagcgtcatggtatcacgccccactatcagcgaa
acagatggaactgtgacatctttgcttccttacgaatgccgagaccgtaacttgacctac
gccagtccgctctacatcaaaatcaccaaaaaggtgtctgcggctgtcgagagagaggtt
ccgctgcacgagatggacgatgcccagcaagaacagtatgcaaggaccggagagcaccct
acaaagttggaatgggaagaggaagaaaatggcgaagacgataatctcggcaagtctgac
gactggaaggacatggttttcgttggcaagctgcccatcatggtcaaatccaagatttgt
catctgagccgtgaacaggatgatagcctgttccttgtcaacgagtgcccgtacgaccaa
ggcggttatttcgtcatcaacggtagtgaaaaggtcctcatcgcccaagagcgctccgcc
gcaaacattgttcaggtcttcaagaaggcccagcccagtgcttatacctacacggccgaa
atccgaagtgcgctggaaaagggatctcgactcatctctagcatgatgctcaagttgtat
ggcaaaggagactctgcgcgaggtggttttggccagactattcacacaaccctgcctttc
gtcaagtcagatcttcccgtcgccattgttttccgtgccttgggtgtcgtttctgatgaa
gacattctgaatcacatttgctacgatcgaaacgacagccaaatgcttgaaatgcttcgg
ccttgtattgaagaagctttctgcgtccaggatcgagaggttgctctcgatttcatcggc
aagcgaggcaaccgtgatcaagctggcctaggtcgtgagaaacgtgttcgtgtagcgaag
gacattctccagaaggagacgcttccccacatttcccaaactgaaggcagcgagacgaga
aaggcattcttcctcggatacatggtgcacaagctattgcaatgcgcacttggaagacga
gagcccgatgaccgagatcacttcggaaagaagcgtctggatctggctggtccactgctg
gccaagctgttccgtggtatcatgcgtagaatgaataccgaattggccaactacctgaga
cgatgtgttgagggtaaccgccacttcaacctggctgttggcattaagcctggcacactc
tccaacggattgaagtattcactcgccaccggaaactggggtgaccagaagaaggcaatg
agctcaaccgcaggtgtatcacaggtgcttaaccgttacacttttgcttcgacactttct
catttgcgtcgtaccaatacacccatcggaagagatggtaagctggcgaagcctcgacag
cttcacaacacacactggggtttggtatgcccagccgagacccctgaaggacaggcttgt
ggtttggtcaaaaacttgtctctgatgtgctacgtcagtgtcggatctccttccgagccc
ttgatcgagtttatgatcaacagaggtatggaggtcgttgaggagtacgaaccgctgagg
tatccccatgcgacaaagatttttgtgaatggtgtctgggttggaatccaccaagacccc
aagcatctggtaaaccaagttttggacactcgtcgtaaatcctatctgcagtacgaagtc
tctctgatcagagatattcgtgaccaagaattcaaaatcttctctgacgccggtcgtgtt
atgcgtcctgtctttactgtacagcaagaggatgacccggaaacgggcatcaacaagggc
cacctggttttaaccaaggatcttgtcaatagactggccaaagagcaggctgagcctccg
gaagatccaagcatgaagcttggatgggaagggttaattcgggctggtgcggtggaatat
ctcgatgctgaggaagaagaaacggctatgatttgcatgacaccggaggatcttgagctt
taccgtcttcagaaggctggcattgccacagatgaagacatgggagacgatccaaacaag
cgtctcaagaccaagacaaatccgacaactcacatgtacacgcattgcgagattcacccg
agtatgatcttaggtatctgtgctagtatcattcctttccccgatcacaaccagtccccc
cgtaacacctaccaatctgccatgggtaaacaagccatgggcttcttcttgaccaactat
tctcggcgtatggacaccatggccaatatcctctactaccctcagaaaccgctgggcacc
actcggtctatggagttcttgaaattccgtgagctgccagccggacaaaacgccattgta
gcaattgcttgttactctggttataaccaagaagattccgtcattatgaaccagagtagt
attgacagaggtctcttccgaagtcttttcttccgatcatattcagatcaggagaaaaag
gttggcttgaactacacggaagtgtttgagaagccattccaccaaaacacccttcgtatg
aagcacggcacatatgataagctggatgaagatggtatcgttgctcctggtgtccgagtg
tcaggtgaggatatcatcattggcaagacggcgccaatcgaccccgagacccaggatctt
ggaaccaggacgaccatgcaccagagacgcgatatctcaacgcctctgcgaagtaccgag
aacggtatcgttgaccaggtcatcgtcacggtgaacgcggacaatgttaagtatgtcaag
gtccgtgttcgaacgaccaagattccccagattggagacaagtttgcttctcgtcacggt
cagaagggcactattggtgttacttaccgacaggaggatatgcctttcacaagagaaggt
ctcactccagatatcattatcaacccccacgccattccgtctcgtatgacaattgctcac
ttgattgagtgtctcctcagtaaggtctctacgttggaaggtatggagggtgatgctact
cccttcacggatgtcacggtcgactcagtctctgagctcttgcgaaagcacggttaccag
tctcgaggtttcgagattatgtacaacggccatactggccgcaagctaagagcacaagtg
ttctttggaccaacatactaccagcgactccgtcacatggtggatgacaagatccatgcc
agagctcgcggtcctgtgcagatcatgacaagacagccggtggagggtcgtgctcgagat
ggtggtctccgattcggagaaatggaacgtgattgtatgattgcacacggtgcggcgtcc
ttcctcaaggagcgattgtttgaggtgtcggacgccttcagagttcacatttgcgagatt
tgtggactcatgacacccattgctaacttatccaaacaatcgttcgagtgccggccatgc
aagaacaagactaagattgcacagattcacattccttatgctgccaagctcttgttccaa
gagctccagtctatgaacattgcagctagaatgtatacaaaccgatctggtgcatctatc
cgatag
DBGET
integrated database retrieval system
