Trichoderma asperellum: 90967371
Help
Entry
90967371 CDS
T10296
Symbol
TrAFT101_012036
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tasp Trichoderma asperellum
Pathway
tasp03013
Nucleocytoplasmic transport
tasp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tasp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
90967371 (TrAFT101_012036)
03015 mRNA surveillance pathway
90967371 (TrAFT101_012036)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tasp03019
]
90967371 (TrAFT101_012036)
Enzymes [BR:
tasp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
90967371 (TrAFT101_012036)
5.6.2.5 RNA 5'-3' helicase
90967371 (TrAFT101_012036)
Messenger RNA biogenesis [BR:
tasp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
90967371 (TrAFT101_012036)
mRNA cycle factors
Common to processing body (P body) and stress granule
90967371 (TrAFT101_012036)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
NAT10_TcmA_helicase
Viral_helicase1
NPHP3_N
SLFN-g3_helicase
PIF1
ATPase
nSTAND3
AAA_22
Ribosomal_S13_N
SRP54
AAA_16
PhoH
AAA_25
AAA
nSTAND_NTPase5
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
90967371
NCBI-ProteinID:
XP_065984072
LinkDB
All DBs
Position
4:complement(join(2041361..2044325,2044383..2044669))
Genome browser
AA seq
1083 aa
AA seq
DB search
MEGAFTHVGNHLISDSAAAIKAGADDLSTIDPDEALLYGKYGGQSGRRRADDDDNQTEAF
EEDDNDSLNSVPVDQMMGMKLKHPEEEKELPAHACAYCGIHSPACVVKCLTCNKWFCSAR
GSGSSTHIVNHLVRARHKEVQLHPESTLGDTVLECYNCGTKNAFILGFIPAKSDAVVVLL
CRQPCAAASSNKDMNWDTSRWEPLIEERAFLPWLVNPPSDAEQLRARHLTINTIAKLEEM
WKQEPDATIQDLEKASNIDDEPLPVQLTYDDPYHYQNIFGPLVKMESDYDKKLKEAQSED
GLTVRWDYALNNKHIASFNLQKIESGDVKLAVGDEMRLRYTGELREPWEGVGYVIKIPNS
QSDEVCLELRKTGNDKLVPIDLSHNFSADYVWKATSYDRMQLAMKTFAVDDMSVSGYIFH
ILLGHICQPPPMKVTLPKKWSAPGLPDLNQGQVDAIKAVLQRPLSLIQGPPGTGKTVTSA
TIIYHLAKMSGSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVTFLALHE
QVRMSEHNTELVKLSQLKNEVGELSSQDEKKLRQLTKAAEREILSNADVICCTCVGAGDP
RLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNRS
LFERLINLKINPIPLKTQYRMHPCLSEFPSNMFYDGTLQNGITHEQRVRKDVDFPWPVTE
MPMMFWSNIGHEEISTSGTSYLNRTEASNVEKTVTRFFKAGVKPSEIGVITPYEGQRSYI
VSTMQNSGTYKKELYKDVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVAL
TRAKYGLVILGNPKVLSKHELWHNLLAHFKDRKCFVEGPLTNLQACLLQFSRPRVSYRQR
SSQPSQYPSARQSNGRFNGGPPGRDFDAGSMVSYIPDDVSSIQGSAFGGAALNTAFPPMF
SSFAPEQWPGLPGVSAPGRGHKGRNRAPESIAGESVANSELTDASASVIGAKGIGQGGVS
LGAGLHDVVTGMRAVSYSQSDRLKQYVESNGRMTLGSGYGRRYDDDEKSISTAFHSQIGG
GYD
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggagggagccttcacccatgttggtaaccatcttatttccgactcagctgctgccatc
aaggctggcgctgacgacttgtcgactatcgatcctgacgaggctctactctacggcaaa
tatggcggccaaagtggccgacgccgagctgatgacgacgataatcagacggaggcattt
gaagaggacgataacgacagtctcaatagcgtccccgttgatcaaatgatgggcatgaag
ttgaagcatcctgaggaggagaaagagcttccggctcatgcatgcgcatactgtggaatt
cactctccggcctgtgtcgtgaaatgccttacgtgcaacaagtggttctgcagtgcccgc
ggcagcggctcatcaacccatatcgtcaatcatcttgttcgcgcacgccacaaggaagtg
cagctacaccccgaatcgactctcggagacaccgttctagaatgttacaactgtggaacc
aagaatgccttcattctgggatttatcccagcaaaatctgatgccgtggttgtcctacta
tgccgtcaaccctgcgccgccgcttcgtcgaataaggacatgaattgggacacctcgcgg
tgggagcccctcatcgaggagcgggcatttttgccttggctcgtgaacccaccgtccgat
gctgaacagctgcgcgcccgccacctcacgatcaacacgattgccaaactcgaagaaatg
tggaaacaggagccggatgcgacgattcaagatttagagaaggcttccaacatcgacgac
gagcctcttcccgttcagttgacatacgatgatccctaccattaccagaatatttttgga
ccccttgtcaagatggaatccgactacgataagaagctcaaggaagcgcagtcagaagat
ggtctaactgttcgctgggattatgctctcaataacaagcacattgctagctttaacctg
cagaagattgaatcgggagatgtcaaactcgcagtcggcgacgaaatgcgactacgatac
accggcgaacttcgagaaccatgggagggtgttggatacgtcatcaagatccccaacagc
caatctgacgaagtttgccttgaactccgcaagactggcaatgacaagctagtccccatc
gacctttctcacaacttttcggccgattacgtttggaaggccacctcgtacgatcgtatg
cagttggcaatgaagacgtttgccgttgacgacatgagcgtctcgggatacatcttccac
atcctactaggccatatctgccagccaccgcctatgaaagtcacgctgcctaagaagtgg
tctgctcccgggctacctgatttgaaccaaggccaggtggatgccatcaaggctgttctt
cagaggccgctcagtctgatccaaggaccccctggtacaggaaagacggttacatcggct
actatcatctaccaccttgccaagatgagcggtagccaagttctggtgtgcgctccgtcc
aacgtcgctgtggaccagctctgtgaacgcatccaccgtaccggactcaaagtggttcga
cttacagcaaagtcgagagaggatgtcgagtcgtctgtcaccttcctggcattgcacgaa
caggttcgcatgtccgagcacaataccgagctcgtgaagctgtcgcagttgaagaatgaa
gtcggcgaactttcaagccaagacgagaagaaactgagacagctgaccaaggccgccgag
cgagagattttgagcaacgcagatgtcatctgctgtacttgtgtcggcgcaggtgacccg
cgactctccaagatgaaattccgaaacgtcctcattgacgaatccacgcaatctgctgag
ccagaatgcatgattcctcttgtgctcggatgcaagcaagtcgtcctggtcggagatcac
aagcaacttggacctgtgattatgaacaagaaggcggccaaggcgggtctcaataggtct
ctgtttgaacgactcatcaacttgaagatcaacccgatcccgctaaagacacagtaccga
atgcacccatgtctttcggagtttccctcaaatatgttttatgatggtactcttcagaat
ggcatcacccatgagcagcgagttcgaaaagacgttgattttccctggcctgttacagag
atgcccatgatgttctggtccaacattggccacgaagaaatttcaacgtctggcacttcg
tacctaaaccgaacagaggcctcgaatgtggagaagactgtgacacgtttcttcaaggcc
ggcgtgaagccatccgagattggagtcattacaccgtatgagggccagcgaagctatatt
gtctccaccatgcaaaactctggcacatacaagaaggaactttacaaggatgtggaagtg
gcctcggttgacgcattccagggtcgtgagaaggactttattgtcctatcctgcgttcgt
tccaatgataaccaaggcattggattcttgtcagacccccgtcgtctcaacgtcgcactc
acccgagccaagtatggtcttgtcattctcggaaaccccaaagttctctccaagcatgag
ctttggcacaacctcctcgctcatttcaaggatcgcaagtgctttgtcgaaggtcccctt
accaatctgcaggcttgtcttctgcagtttagccgccccagagtgagctatcgccagagg
agcagccagccatctcagtatccaagcgccaggcagtcaaatggcagattcaacggcggc
cctcctggccgtgattttgatgcgggctccatggtttcttacattccggacgacgtttct
tcaatccagggctcagcctttggaggcgcagcactcaatacggcattcccgccaatgttc
tctagctttgcccccgagcagtggcctggactgcccggagtgtcggcgcctgggcgagga
cataagggtcgtaaccgagcgcctgaaagcattgccggagagagcgtggccaattctgag
ctaacagatgcctcagctagcgtcattggtgccaagggaattggtcaaggcggcgtcagc
ctgggagctggattgcacgacgtggtgacgggaatgcgagcagtgtcctacagccagagt
gatcgattgaaacaatacgtggaaagcaacggtcgtatgactctgggcagtggctacggc
cgacgttacgacgacgacgagaagagcatcagcactgctttccatagccaaatcggcgga
ggctacgactga
DBGET
integrated database retrieval system
