Tateyamaria sp. SN3-11: ACMHLQ_08380
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Entry
ACMHLQ_08380 CDS
T11508
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tate Tateyamaria sp. SN3-11
Pathway
tate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMHLQ_08380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tate03019
]
ACMHLQ_08380
03009 Ribosome biogenesis [BR:
tate03009
]
ACMHLQ_08380
Enzymes [BR:
tate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACMHLQ_08380
Messenger RNA biogenesis [BR:
tate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACMHLQ_08380
Ribosome biogenesis [BR:
tate03009
]
Prokaryotic type
rRNA helicases
ACMHLQ_08380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
XOI64452
LinkDB
All DBs
Position
complement(1225234..1227306)
Genome browser
AA seq
690 aa
AA seq
DB search
MITPLQTALTARGYTDLTPVQTAVTDPALTAADLLVSAQTGSGKTVGFGLALGPTLLGDE
DLFQMADAPLALVIAPTRELAMQVKRELGWLYGETGVVMASCVGGMDMRDERRALGRGAH
IVVATPGRLRDHIMRGSIDLTAIRGVVLDEADEMLDLGFREDLEFILGECPDTRRTLMFS
ATVPAQIARLAKTYQKDAVRVETTSGQKQHADITYQAMMVANHDAENAIINILRFHEAPN
AIVFCNTRAMVNRVTTRLSNRGFPVVALSGELTQSERTNALQAMRDGRARVCVATDVAAR
GIDLPNLDLVVHAELPSNHETLLHRSGRTGRAGRKGTSALIVTAKVRSKAMRILKGAKLE
AEWVDAPSAEAVRAQDEIRLMDDPMWTDAITEGEADMVAKFTERFTPEQLAAAVLRIHGL
RHSAPEHLSAVTGEKAPKARAPFGPSTWFSVTGGRDQGVEVRRLLPIICNAGDITKDDIG
AIRIVGDMSYVELKTEAVDGFLKNLGAAMQVEGGAKVTRLDGIPDAASQPKPRFEPKPKR
DYGDKPKRSYDDKPKRGFADAHKPATKPSPKKVWDSAAAPAPKPRNDAAPIDWNDTSTPK
PRKPKPGDKTKGKPAGKSRFSKAPSTMDKAVRDGAVSTGKKPRHKTTQKGKPTGKPTTGA
PKVGKYNSKKNQARRAAAGQGGAQPPRRKP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
ttgattactccgcttcagaccgcgctgaccgcacgcggctataccgacctgacccccgtt
cagaccgccgtgaccgaccccgcgttgacagctgccgatttgctggtgtctgcccagaca
ggatcgggcaagaccgtgggctttggcctcgcccttggccccacgctgctgggggacgag
gacctgttccagatggccgatgcgccgctggccctcgtgatcgcgccgacgcgcgaattg
gcgatgcaggtgaaacgcgaacttggctggctttacggtgaaacgggcgttgtgatggcg
tcttgtgtgggcggcatggacatgcgcgacgaacgccgtgcgctggggcgcggcgcgcat
attgttgtcgccacgccggggcgcttgcgcgaccacatcatgcgcggctcgattgacctc
accgccattcgcggcgtggtgctggacgaggcggacgagatgctcgacctcggctttcgc
gaagacctcgaattcatcctcggtgaatgcccggacacacgccgcaccctcatgttctcg
gccacggtgcccgcgcagatcgcgcggctggccaagacctatcagaaagacgcggtgcgg
gtcgaaacgacctcgggtcagaaacaacacgccgacatcacctatcaggccatgatggtg
gccaatcacgacgccgaaaatgcgatcatcaacatcctgcggttccacgaggcccccaat
gccatcgtgttctgcaacacccgcgccatggtcaaccgcgtcaccacgcgcctgtccaac
cggggttttccggttgtggcgctttcgggcgagctgacgcaatccgaacgcaccaatgcg
ctgcaagcgatgcgcgacgggcgcgcgcgggtctgcgtggcgacggacgtggccgcacgc
gggatcgacctgcccaacctcgatctggtggtgcatgccgaactgccctccaaccacgaa
acgctgctgcaccgctcggggcgcacaggccgcgccgggcgcaagggcacaagcgcgttg
atcgtcacggccaaggtgcgatcgaaagccatgcgcatcctcaaaggggccaagctggag
gccgagtgggtcgatgcgccctctgccgaggctgtgcgcgcgcaggacgaaatccgcctg
atggacgatcccatgtggacggatgccatcaccgagggcgaggccgacatggtcgccaag
ttcaccgaacggttcacccctgaacaactggccgccgccgtgctgcgcattcacggcttg
cgccattcggcgcccgagcacctctctgccgtcacgggtgaaaaggcccccaaggcgcgc
gcgccattcgggcccagcacgtggttttcagtcacgggcgggcgcgatcagggggtcgag
gtgcgtcgccttctgcccatcatctgcaatgccggcgacatcaccaaggacgacatcggc
gcgatccgcatcgttggggatatgtcctatgtcgagctgaagaccgaggcggtcgacggt
ttcctgaaaaaccttggcgcggcgatgcaggtcgaaggcggggcaaaggtgaccaggctt
gacgggatccccgatgcggcgagccagccaaagccacgttttgagcccaagcccaagcgc
gactacggtgacaaacccaagcgcagctatgacgacaagcccaaacgcggctttgccgat
gcgcacaaaccggccaccaaaccctcgcccaagaaagtctgggacagcgccgccgcaccc
gcgcccaaaccgcgcaatgacgcggcccccatcgactggaacgacacctcgacccccaag
ccgcgcaaaccgaaacccggcgacaagaccaagggcaaaccggcgggcaagtcgcgattc
tccaaggcgccttcgacgatggacaaagcggtcagggacggggccgtgagtacgggcaag
aaaccacgccacaagaccacgcaaaagggcaagcccacaggcaaacccacaacgggcgcg
cccaaggtcggtaaatacaacagcaagaaaaaccaggcccgccgcgcggcggcagggcag
ggcggcgcacagccgccccggcgcaaaccctaa
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