Tatumella sp. TA1: EFZ10_01615
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Entry
EFZ10_01615 CDS
T09934
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tatu
Tatumella sp. TA1
Pathway
tatu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFZ10_01615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatu03019
]
EFZ10_01615
03009 Ribosome biogenesis [BR:
tatu03009
]
EFZ10_01615
Enzymes [BR:
tatu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EFZ10_01615
Messenger RNA biogenesis [BR:
tatu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EFZ10_01615
Ribosome biogenesis [BR:
tatu03009
]
Prokaryotic type
rRNA helicases
EFZ10_01615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
Piwi_N
Motif
Other DBs
NCBI-ProteinID:
QGX90444
LinkDB
All DBs
Position
315644..317512
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AA seq
622 aa
AA seq
DB search
MTDIQTTFSDLGLNEFILSALNDLGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPTLKAPQILVLAPTRELAVQVGEACNEFSKHMRGVNVLALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKNPQEVRIQSSLTTRPDISQSYWTAYGRKSDALVRFLE
AEDFDAAIIFVRTKNATLEVAETLERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSTRRQEKFAARVQQQLESSDLDLYRGLLTKLSPQEDLDMETL
AAALLKMAQGERSLIVPTEAPRPPRREFRDRDDRRDERRSDDRRGPSRDSGPREDRPRRE
RREVGDMLLYRIEVGRNDGVEVRHIVGAIANEGDISSRYIGNIKLFDGHSTIELPKGMPG
EVLQHFTKTRILNKPMNMQLMGDAQPGEPRRGRGGRDGGSRDGAGAGAGRGGREGGRRFG
GGNRNEGNRGEGHRGRREEPRR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccactttttccgatctaggccttaacgaattcattctttctgca
ttgaatgacttgggttacgttaaaccatcacctatccaagccgagtgtatcccacaccta
ctcgcgggtcgtgatgtattgggtatggcccaaaccggaagtggaaaaactgcagcgttc
tcgctgccactccttaacaacatcgatccaactttaaaagcacctcaaattttggtgcta
gcgcctactcgtgagttagcggtccaagttggtgaagcatgtaacgaattctcaaagcat
atgcgtggcgtaaacgtattggcactgtatggtggccaacgttatgacgtgcaactgcgt
gcattacgccaaggtccacaaatcgttgtcgggacaccgggccgtttacttgaccactta
aagcgtggcactcttgatctttctaatctgcgtggcttagtactggatgaagccgatgag
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcaaatccctgaaggt
catcagacggctctgttctcggcaactatgccagaagcgattcgtcgtattactcgtcgt
ttcatgaagaacccacaagaagttcgtatccaatcgagcttaacgacgcgtcctgacatc
agccaatcttactggactgcatacggacgtaaaagcgatgcgctcgttcgtttcttagaa
gccgaagacttcgatgcagcgattattttcgttcgtactaaaaacgcaactctcgaagtt
gctgagacgttagagcgtagtggctacaatagtgctgcactaaacggcgatatgaaccaa
gcgctgcgtgagcaaactcttgagcgtctgaaagacggtcgcctagatatcctgattgcg
accgatgttgcggcgcgtggtctagatgttgagcgtatcagcctcgttgtaaactatgat
attccattagacgcagagtcttacgttcaccgtattggccgtactggccgtgcgggtcgt
gcgggtcgcgctttactgttcgttgagaaccgtgagcgtcgtttactgcgtaatatcgaa
cgtacgatgaagctgacgattcctgaagtcgagctgcctaatgctgaactgctgagtact
cgccgccaagagaaatttgcggcacgtgtacagcaacaactcgaaagcagtgatttagat
ctgtaccgtggcctgctgactaagctatcgccacaagaagatctcgatatggaaacttta
gctgcagcgttactgaaaatggctcagggtgagcgttcactgatcgtccctactgaagca
ccacgtcctccacgtcgtgagttccgtgatcgtgacgaccgtcgtgatgagcgtcgtagt
gatgatcgccgtggccctagccgtgatagcggtccacgcgaagatcgtccacgtcgtgag
cgtcgtgaagtcggtgatatgctgctgtaccgtatcgaagttggccgcaacgatggtgtt
gaagttcgtcatatcgttggcgctatcgctaacgaaggcgatatcagcagccgttacatc
ggcaacatcaaattgtttgatggtcactcaacaatcgagttacctaagggaatgcctggt
gaagtcctgcaacacttcacgaagacacgcatccttaacaaaccgatgaacatgcaatta
atgggtgatgctcagccgggcgaaccacgtcgtggacgcggtggtcgtgacggtggaagc
cgtgatggcgctggcgctggagcaggtcgcggcggtcgtgaaggtggacgtcgtttcggc
ggtggaaaccgtaatgaaggtaaccgtggtgaaggtcatcgcggacgccgtgaagaacca
cgccgttaa
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