Tatumella sp. TA1: EFZ10_05835
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Entry
EFZ10_05835 CDS
T09934
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tatu
Tatumella sp. TA1
Pathway
tatu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFZ10_05835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatu03019
]
EFZ10_05835
03009 Ribosome biogenesis [BR:
tatu03009
]
EFZ10_05835
Enzymes [BR:
tatu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EFZ10_05835
Messenger RNA biogenesis [BR:
tatu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EFZ10_05835
Ribosome biogenesis [BR:
tatu03009
]
Prokaryotic type
rRNA processing factors
EFZ10_05835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QGX91186
LinkDB
All DBs
Position
complement(1232806..1235757)
Genome browser
AA seq
983 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISRENFPDNYSGHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRSELKEALSSLDIPNGMGLIVRTAGVGKSAESL
QWDLNFRLKHWEAIQKAANSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPSVLELA
RQHIAALGRPDFTSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPARHQRAVE
NKLRDAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVPVASYLLNEKRSAVNAIETRQGGVKTIIVPDDKMQ
TPHYSVLRVRKGEETHTLSYHLPKLHETEMALPSEEETVERRRPEQPALAAFAMPDAPPV
VTETPASASATAEKPAGCFFSRLVKGIKSFFSGSDAAEKTTPEATPAAPVATESSQQQDR
PRQSDRRNNQRRNNNRYERNDKNDRPARSNQKEYASTTQQDDNRRNANRTQQVTAEPSAR
QERAPRQDNAVSDEVRQQREQQRREQRAERQRRRQEERREQQEVRKQETAIVEPASETVT
SEEQPREVEIKVIPRRQPRALQQKVRVVDNAATPVVAPQTEQAVEATAPVQASPAPQAST
DNNDVAPRRSRRSPRHLRVSGQRRRRYRDDRYPQQTPMAVTTAAAAPEMASGKVWVRYDL
APTPAQPVVDTTIEQTALPATETEVVTAPVVYATPSETDATQAPTAVEPVAVIEPAPASE
APTVTETQPLAVPSATPTSPAAITRGRLVATSPVTKAEAPAWVSEPVKPSDWLRPAYHFT
GKGAAGGHAARHHATADVTKTDE
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaacgcaactcagcaggaagagttgcgtgtcgcactagtagat
ggacaaaaactctatgacttggatattgaaagtccaggccatgaacaaaagaaagcgaat
atttataaaggtaaaatcactcgtattgagcctagcttagaagccgctttcgttgactat
ggcgctgaacgccatggttttctccctcttaaagaaatctctcgcgaaaacttccctgac
aattactccggccatggtcgcccgaacatcaaagatgttctgcgcgaggggcaagaagtt
atcgtacagatcgataaggaagaacgtggtaataaaggggcagccctcaccacgtttatc
agcttggcgggcagttatttagtcctcatgccgaataatccacgagcaggtgggatctca
cgccgtatcgaaggcgacgaccgtagcgagctaaaagaagcattatcttcccttgatatc
ccaaatgggatgggactcattgtgcgtaccgcaggggttggtaaatcggcagagtcgcta
cagtgggacttgaacttccgcctcaagcattgggaagcgatccagaaagcggccaacagt
cgtcccgcgccattcttgatccaccaagaaagtaacgttattgttcgcgcctttcgcgac
tacctgcgccaagatatcggcgagatcctgatcgataacccaagcgtccttgaactagca
cgtcaacatatcgcggcgctaggccgtccagatttcactagtaaaatcaaattatattcg
ggtgagatccctctatttagccactatcagattgaatctcagatcgagtctgcgtttcag
cgcgaggttcgtcttccctctggtggttccatcgttattgacacgacggaagcccttacc
gctatcgatattaactcggcgcgctctacccgcggtggcgatatcgaagagacagccttc
aatacaaaccttgaagcggccgatgagatcgcacgccagttacgcttacgcgacttgggt
ggcctgattgtcatcgacttcattgatatgacacctgcgcgtcaccaacgtgccgttgaa
aacaaattacgcgatgccgtccgccaagaccgcgcgcgcatccaaattagccacatctca
cgctttggtctgctggagatgtcgcgtcagcgtctgagcccttctcttggtgaatcgagc
catcacgtttgcccacgttgtagtggcaccggaaccatccgtgataacgaatcgttagcg
ctatctatccttcgtctcatcgaagaagaagcccttaaggacaacactaaagaagtgcat
gcgatcgtccctgtgcctgtcgcatcctacttattaaacgaaaagcgctctgccgttaat
gcgatagagacacgccaaggtggtgtgaaaaccatcatcgtcccagacgataaaatgcag
acgccacactactctgtgctacgcgttcgtaagggcgaagagacacatacgctaagctac
cacttaccgaagctgcatgaaaccgagatggcactgccatcggaggaagaaacagttgaa
cgccgccgccctgagcaacctgcactcgccgcctttgcgatgccagatgctccaccggtt
gtaacggaaaccccagcttcagcttcagctaccgctgaaaaacctgcgggctgcttcttc
agccgtttagtcaaaggtatcaagtcgttcttctccggctctgacgctgcagaaaagacc
accccagaagcgacgccagcggcaccagtcgcgaccgaatcgtctcaacagcaagatagg
ccgcgccagtcagatcgtcgtaataatcaacgccgtaacaataaccgctacgagcgtaac
gataaaaacgaccgtcctgcgcgttcaaaccaaaaagagtacgcctcaacaacccagcaa
gacgataaccgtcgtaatgctaatcgtacgcagcaagtcactgctgaaccgtcagcccgt
caagagcgcgcaccgcgtcaagacaacgctgtaagcgatgaagttcgtcagcaacgcgag
caacagcgccgtgagcagcgtgctgagcgtcaacgtcgtcgtcaagaagagcgccgtgaa
cagcaagaagtgcgtaagcaagaaactgccattgtcgagccggcaagcgaaacggtcact
agcgaagaacagccgcgtgaagtcgaaattaaggtaataccgcgtcgtcagccacgcgcg
ctgcaacagaaagttcgcgtcgtcgacaacgctgcgacgccggtggttgcgccacagact
gagcaggcggttgaagccactgcacctgtgcaagcctctcccgcgccgcaagctagcacg
gataataatgatgtcgcaccacgtcgctcgcgccgttctccgcgtcatctacgtgtgagt
ggccaacgtcgccgtcgttatcgtgatgaccgttacccacaacagaccccgatggccgtc
actacggcagccgcggccccggaaatggcttcgggtaaagtttgggtacgttatgatctt
gcacccacgcctgcgcagccggttgttgacacgactatcgagcaaaccgccctgcctgct
accgagacagaggtcgttacggctccagtcgtttacgctacaccgagtgaaaccgacgca
actcaagcgccaaccgccgttgagccggtagcggttattgagcctgcgccagcgagcgaa
gcgccaaccgtgactgagactcaaccgctagcagtaccctctgcgacgccgacgtctcca
gccgccatcactcggggtcgtctggttgctacctcaccggtaacgaaagccgaagctcca
gcttgggtgtcagagcctgtgaagccaagcgactggttacgtccagcctatcatttcacc
ggtaaaggtgcggcaggcggtcatgcagcacgtcaccatgccaccgctgacgtgactaaa
acagacgagtag
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