Tatumella sp. TA1: EFZ10_07100
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Entry
EFZ10_07100 CDS
T09934
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tatu
Tatumella sp. TA1
Brite
KEGG Orthology (KO) [BR:
tatu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tatu03032
]
EFZ10_07100 (topA)
03400 DNA repair and recombination proteins [BR:
tatu03400
]
EFZ10_07100 (topA)
Enzymes [BR:
tatu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EFZ10_07100 (topA)
DNA replication proteins [BR:
tatu03032
]
Prokaryotic type
DNA Topoisomerases
EFZ10_07100 (topA)
DNA repair and recombination proteins [BR:
tatu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EFZ10_07100 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QGX91417
LinkDB
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Position
1488430..1491027
Genome browser
AA seq
865 aa
AA seq
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MGKALVIVESPAKAKTINKYLGSGFVVKSSVGHVRDLPTSGSAAKKSGTTSKAKGTKAVK
KDATEALVNRMGVDPWHGWKANYQILPGKEKVVAELQALAKDADHIYLATDLDREGEAIA
WHLREIIGGDDQRFSRVVFNEITKNAIQQAFDKPGQLNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPQEYWEVDTTLTTPKGDELLMRVTH
KSDAAFKPTNKQETDSAVKLLEKARFDVLDREDRPTSSKPSAPFITSTLQQAASTRLGYG
VKKTMMLAQRLYEGGHITYMRTDSTNLSQDALSMARDYIQSEFGDKYLPDSAIVYSSKDN
AQEAHEAIRPSDIVVEAEQLKDMEADARKLYQLIWRQFVACQMTPARYDSTTLTVKAADF
TLKAKGRTLRFDGWTKVMPALRKNDEDMTLPVVAVGDSLGLNTIIPRQLFTKPAARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVQVENRRFYAEKMGEIVTDRLEENFQELMNY
DFTARMENHLDQVANKEAEWKGVLDTFFGDFTSQLTQAEKDPEEGGMQPNPMVLTSIDCP
TCDRAMGIRTATTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDAETNALRARR
RCEKCGTAMDSYLIDEKRKLHVCGNNPSCDGYEVEAGEFRIKGYDGPIVECDKCGNEMHL
KLGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELECEKSDAYFVLRDGASGIF
LAANTFPKSRETRAPLIEELQRFKERLPEKFIYLTEAPATDPQGNKTLVRFSRKTKQQYV
SSEKEGKATNWTLFYVDGKWQEVKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgtcatagtggagtcacctgcaaaggccaaaacgattaataaatat
ctgggcagtggctttgtcgttaaatctagtgtgggtcacgtccgtgatttacccaccagc
ggttcggcggcaaaaaagagtgggactaccagtaaggcaaaaggcactaaagccgttaaa
aaagatgcaacagaagcgctcgtcaaccgaatgggggtcgatccttggcacggctggaag
gcaaactaccagattttacccggtaaagagaaggtcgttgcggaactgcaagctcttgct
aaagatgctgaccacatttatctcgcaacggatttggaccgtgagggagaagctatagca
tggcatttgcgcgaaattattggcggtgatgaccagcgctttagtcgcgtcgttttcaac
gaaattactaagaatgcgattcagcaggcgtttgataagcccggtcaattaaatatcgat
cgcgttaacgctcagcaggctcgacgctttatggaccgtgtcgtgggttacatggtctct
ccgctattgtggaaaaaaattgcgcggggcctctcggcgggccgtgtgcaatctgtcgcg
gtacgcttagtagtggaacgcgaacgcgaaatcaaggcatttgtcccgcaagaatattgg
gaagtcgatacaaccctcaccacaccgaaaggtgatgaactactcatgcgtgtcacgcat
aaaagtgatgcagcatttaagccgaccaataagcaagagacggactctgcagttaagcta
ctggaaaaagcacgcttcgacgtgctcgatcgggaagatagaccgacgagcagcaaaccc
agcgcaccgtttatcacgtcgactctacagcaggcggcgagtacacgccttggctatggt
gtgaagaagacgatgatgctggctcagcgtttgtacgaaggtggccatatcacttacatg
cgtactgactcgaccaacctcagtcaagacgcattgagcatggcacgcgactatatccag
tcggaattcggagacaaatatctcccagactcagcgatagtctactctagtaaagataat
gcccaagaggctcatgaagctatccgtccttccgatatcgttgttgaggctgaacaactt
aaagatatggaagccgacgcccgtaaattataccaacttatttggcgtcaatttgttgcc
tgccaaatgacacctgcccgttacgattccacgacattaacggtgaaagctgctgatttc
acgctcaaagcgaaaggtcgtacgctgcggtttgatggttggactaaagtgatgcctgcg
ttgcgtaaaaacgacgaagatatgacgcttccggttgtcgcagtcggcgactctctcggt
ttgaatacgattatcccacgtcagctgttcacgaagccagccgcgcgttttagcgaagcc
tcactcgtccgggagctggaaaagcgcggtatcggccgaccttcaacttatgcatcgatt
atctcgactatccaagatcgcggttacgttcaggttgaaaaccgccgtttctatgcggag
aaaatgggggaaatcgttaccgatcgcttggaggagaatttccaagaactgatgaattac
gattttaccgcgcgcatggaaaatcatcttgaccaggttgcgaataaagaagccgagtgg
aaaggtgtcctcgataccttctttggcgattttacatcgcaattaacacaagcggaaaaa
gatcccgaggaaggggggatgcaacctaacccgatggtgctcacctccattgactgtccg
acctgtgatcgggctatgggtatccgcaccgcgaccacaggtgttttcttaggctgctcg
ggctatgccttaccgcctaaagagcgctgcaagcagaccatcaacctgatcccagaaaac
gaagttttaaatattctggaaggtgatgatgccgaaaccaatgccttgcgtgcgcgtcgg
cgttgtgagaagtgtggaacggcgatggatagctatcttatcgatgagaagcgtaagctg
catgtctgcggcaacaacccttcttgtgatggctatgaagtggaagcgggggagtttcgc
atcaaaggctatgatggcccaatcgtagagtgtgataagtgcgggaatgaaatgcattta
aaactaggccgatttggtaagtacatggcatgtaccaatgaagagtgtaaaaatacgcgt
aaaattctgcgtaatggagaggtggcaccaccgaaagaagatccggttccactacctgag
cttgaatgtgaaaaatcagacgcttattttgtattgcgtgacggcgcctcagggattttt
ctcgcggcaaatactttccctaaatctcgtgaaacacgtgcgccactcatcgaagagtta
cagcgcttcaaggagcgcctaccggagaagtttatctatctgacggaagcacccgccacg
gatcctcaaggaaataaaacgttagtaaggtttagtcgtaaaactaaacagcagtatgtc
tcttcagagaaagagggcaaagcgacgaactggacactgttctacgtagacggtaagtgg
caagaagttaagaaataa
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