Tatumella sp. TA1: EFZ10_11845
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Entry
EFZ10_11845 CDS
T09934
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tatu
Tatumella sp. TA1
Brite
KEGG Orthology (KO) [BR:
tatu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tatu03009
]
EFZ10_11845 (rlmD)
Enzymes [BR:
tatu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EFZ10_11845 (rlmD)
Ribosome biogenesis [BR:
tatu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EFZ10_11845 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
Cons_hypoth95
PCMT
MTS
Methyltransf_23
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_15
DOT1
NodS
Motif
Other DBs
NCBI-ProteinID:
QGX92257
LinkDB
All DBs
Position
complement(2430389..2431696)
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AA seq
435 aa
AA seq
DB search
MVQFYKAKKTSSARQTMTLCAESIDQFGQGVGHHQGKTCFVEGMLPGETGKVAVTENKRH
FMRAKLITLTTSSAQRREPRCPIYQQCGGCQQQHMSESLQHTSKAEALARLLKPVGVENV
DDIISAQSWHYRRRTRMSLRVDDSGQLVMGFRRKKSNEIVDVRTCPVLVEKLNTVLEPLY
HCLAQLQGAPHLGHVELVAADNDSVTVVLRHLRPLSDQDLKKLEQFSHKHSVSLFLADGQ
QQTLLRGEMPWYGIGEINLYFNPQGFIQVNAEINQQMIDNAIKWLNIQSTDRVLDLFCGV
GNFTLPLARFASSVTGVEGLAELVAKAEYNAQQNNISNAAFYQHNLEQDVSQQPWAKQGF
NKVLLDPARAGAAEVMPYICALQPECIVYISCNPATLARDSKIACQLGYRVVKVAMLDMF
PHTEHLESMVLFERR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaattttataaagcaaaaaaaacctcatcagctcgtcaaacgatgactctctgt
gccgagagtatcgaccagtttggacagggcgtgggtcatcatcaaggcaaaacctgcttt
gtcgagggaatgctgcccggagaaacgggaaaagtagcggtcactgagaataagcgccat
ttcatgcgcgcgaaacttattactctcaccacgtccagtgcacaacgccgagaaccgcgt
tgcccgatttatcagcaatgcggggggtgccagcagcagcatatgagcgaatctttacaa
cacacctctaaggctgaggcattagcacgcttattaaagccggttggcgttgagaacgtc
gatgacatcattagtgcccagagctggcactaccgccgccgcactcgtatgagcctacgt
gtcgacgatagcggacagctggttatgggatttcggcgtaaaaaaagtaacgagatcgtc
gacgtgcgcacctgtccggtcctggtcgaaaaactcaataccgtactagaacctctctat
cactgccttgctcaattacagggtgcccctcatcttgggcatgttgagctggtcgcagcg
gataacgacagcgtcacggttgtcctaaggcatttgcgtcctctttctgatcaggattta
aaaaaactggaacagttttcgcataagcattctgtttcgcttttcttagcggatggacag
caacaaactctgctacggggggagatgccgtggtatggtattggtgagataaatttatat
tttaaccctcaagggtttattcaggttaacgcggaaattaatcagcaaatgattgataac
gcgataaaatggctgaatatccaatcgactgatcgtgtattagacctcttttgtggggta
gggaacttcacccttcctttagcaagattcgcgagttcagtcacaggagtcgagggttta
gccgaattagtggcgaaggcagagtataatgctcagcaaaataacatcagcaatgctgcc
ttttaccaacataatttggagcaggacgtctcacagcaaccttgggcaaaacagggcttc
aataaagtcctgttagatcccgcccgtgcaggggctgcagaggtcatgccttatatctgt
gccttacagccagagtgtattgtctatatttcttgtaatcccgcgacattggctcgggat
agcaaaatcgcctgtcaattagggtatagagtagtaaaagtggcgatgttggatatgttt
ccacataccgaacatcttgaatcaatggtgttatttgaacgtcgttaa
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