Tatumella sp. TA1: EFZ10_12340
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Entry
EFZ10_12340 CDS
T09934
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tatu
Tatumella sp. TA1
Pathway
tatu03410
Base excision repair
tatu03430
Mismatch repair
tatu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tatu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EFZ10_12340 (recJ)
03430 Mismatch repair
EFZ10_12340 (recJ)
03440 Homologous recombination
EFZ10_12340 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tatu03400
]
EFZ10_12340 (recJ)
DNA repair and recombination proteins [BR:
tatu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EFZ10_12340 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EFZ10_12340 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EFZ10_12340 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QGX92345
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Position
complement(2543752..2545482)
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AA seq
576 aa
AA seq
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MSSRTISVLQRRQPSADVTLAGDLPPLLQQLYLQRGITDAAQLERGANHLLPPNGLTGID
QAVQLLHQAMRDNLHIMVIGDFDADGATSTALSVLALKEFGAQHVSYLVPNRFEQGYGLS
PEVVDLAHARHAQLIFTVDNGISSVSGVAHATQLGIPVIITDHHLPGEILPAAAATVNPN
LLDATFPSKNLAGVGVAFYVMLALRAYLREQGWFSGTLPNLGAYLDLVALGTVADVVPLD
ANNRILVWQGLQRIRAGKCRPGIRALLEVSQRQASRLAASDLGFALGPRLNAAGRLDDMS
HGVELLLTDNEAQARMLAVELDALNQTRKEIEQGMQQEALVICEQLEQQQHLPSGLAFYH
PQWHQGVVGIVASRLKERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDVLERLDSQNPGL
ILKFGGHAMAAGLSLAEEQFPRFRDCFAQLVTDWLDQDALQGVVWSDGELGAQHLNVETA
EMLRNAGPWGQTFPEPLFDGEFKLLQQRLVGQKHLKLLLEPVNGGPLIDGIAFNVDLRQW
PDPSLQRATLAYKLDVNEYRGQRSAQLLVEYLWPKA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcacgcactatatcggtactacaacgacgtcagccatcggctgacgttaccctt
gcgggcgaccttccaccgttactgcaacagctctatctacagcgggggatcaccgatgcc
gcgcagttagagcgcggtgcaaaccatctcttaccccctaacgggttaaccggtatcgat
caggccgtgcagctattgcatcaggctatgcgcgataacctgcatatcatggtgatcggc
gatttcgatgccgatggcgcaaccagtaccgcactctctgtattggcgttgaaagaattt
ggcgcgcagcatgtgagctacttggtgcctaaccgcttcgagcagggctatggcctgagt
cccgaggtcgtcgatctcgcgcatgcacgacacgcacagttaatttttacggtcgataat
ggcatctcctcggtcagtggcgtggcacatgccactcagctggggatcccggtgattatt
accgaccatcacctgccaggtgaaatcttgcctgcagcggccgcaacggtgaatcctaac
ttgcttgatgcgaccttcccctcaaaaaatctagcgggggtaggggtggccttctacgta
atgttggcgctacgcgcttatctgcgtgagcagggctggtttagcggaacgcttcccaac
ctcggggcttatctcgacttagtggcgctcggcacggtggccgacgtggtaccgctcgat
gccaataaccgtatcttggtatggcaagggctgcagcgtattcgcgccggaaaatgccgg
ccagggatccgcgcgttgctcgaggtcagccaacggcaagcctcgcgtctcgccgccagc
gatctcggcttcgccctcggccccagactcaatgcggccggacgtttggacgatatgtcc
catggcgtcgagctcctgcttaccgacaacgaggcgcaggcaagaatgctcgcggttgag
ttggatgccctcaatcaaacgcgtaaagagattgagcagggcatgcagcaggaggcgctg
gtgatctgcgagcaactggagcagcaacagcatttgcctagcggcttagccttctaccat
ccgcagtggcaccagggcgtcgtcggcattgtcgcctcgcgcctcaaagaacgcttccat
cgtccggtcatcgccttcgccccggctggggacggcacgctgaaaggctctggccgctcg
atcgccggtctacatcttcgtgatgtattagagcgccttgatagccagaatcccgggctg
atcctgaagtttggggggcatgcgatggcggcaggcttaagcctcgcagaagaacaattc
cctcgttttcgcgactgtttcgcgcaactggttaccgattggctagatcaggacgctcta
caaggcgtagtctggtctgatggcgaactcggcgcgcagcatctaaatgtcgagacggcg
gagatgctgagaaatgcaggcccttggggacagaccttcccagagccgctgttcgacggc
gaattcaagctactccagcagcgcttagtcgggcaaaagcatctaaaactactgctcgaa
ccggtaaacggcggcccgctgatcgatggtatcgcctttaacgttgacctgcgtcagtgg
ccggatccgagcctgcagcgtgcgaccttggcctataagttagacgtcaacgagtatcgc
ggacaacgtagcgcgcaattattagtcgagtacctctggccgaaagcctaa
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