Trichoderma atroviride: 25775377
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Entry
25775377 CDS
T10217
Symbol
TrAtP1_012317
Name
(RefSeq) uncharacterized protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03030
DNA replication
tatv03410
Base excision repair
tatv03420
Nucleotide excision repair
tatv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
25775377 (TrAtP1_012317)
03410 Base excision repair
25775377 (TrAtP1_012317)
03420 Nucleotide excision repair
25775377 (TrAtP1_012317)
03430 Mismatch repair
25775377 (TrAtP1_012317)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tatv03032
]
25775377 (TrAtP1_012317)
03400 DNA repair and recombination proteins [BR:
tatv03400
]
25775377 (TrAtP1_012317)
Enzymes [BR:
tatv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
25775377 (TrAtP1_012317)
6.5.1.6 DNA ligase (ATP or NAD+)
25775377 (TrAtP1_012317)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
25775377 (TrAtP1_012317)
DNA replication proteins [BR:
tatv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
25775377 (TrAtP1_012317)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
25775377 (TrAtP1_012317)
DNA repair and recombination proteins [BR:
tatv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
25775377 (TrAtP1_012317)
NER (nucleotide excision repair)
Other NER factors
25775377 (TrAtP1_012317)
MMR (mismatch excision repair)
Other MMR factors
25775377 (TrAtP1_012317)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
25775377
NCBI-ProteinID:
XP_065971577
LinkDB
All DBs
Position
7:join(956179..956426,956549..956688,956752..957871,957925..958693,958751..959287)
Genome browser
AA seq
937 aa
AA seq
DB search
MRPIINASLPAQRVMLAAGLYRSSCRCLGTRTTNSPARPRYKYCAVDALALRFASTQLIR
CWPSASASAGASSNMAPKQATLGKFFGVKAAAPARQTTLAFATKAGTKEADKAEDEGDAS
TKENSDPEKDSKKRPRSPKKRTEAKPKLAEEEDEAPVSKRARRTRVKIEDDEDEAPQSSP
KKEEAPSSPPAKRKRSRSPKSSPKSRSQSPKAAKIKEESEDVAEKAAKEEEQSSESASEA
DSDAEPKPAVTAKARKAQQTMLQTKEKDAYPDWQPGTPVPYAALCKTFSLIELTTKRLII
MEYCSKFLRQVMRLTPDDLLPTVLLMINKLAPDYAGIELGIGESLIMKAIGETTGRSLQV
IKADQKEIGDLGLVAVKSRSTQPTMFKPKALTVRGVHQGLMSIATVTGNGAQGRKVDGIK
KLLSSSDSHLKEKVDINKDKGGPSEAKYIIRFLEGKLRLGLADRTVLVSLAQAVVAHEAE
VKGKIPTTSDLENGESILKTVYSELPSYDVIIPAMMEHGIANLRDHCKLRPGVPLKPMLA
KPTKAITEVLDRFEGQKFTCEYKYDGERAQIHYVAKDAAQDLDASTQGSTKKIESGVACI
FSRNSEDLSKKYPDVLEKLSAWIKEDTKSFVVDCETVAWDVAEKKVLPFQQLMTRKRKDV
KAEDIKVKVCVFAFDLLYLNGEAVVEKSLRERRELLSTAFVPTEGEFQLATHMNGQELDE
IQTFLDESVKASCEGLMVKMLDGTESGYEPSKRSRNWLKVKKDYLSGVGDSLDLVVLGAY
YGKGKRTSVYGAFLLACYNPSTDVYETVCNIGTGFSEQVLEDLHAQLSEITIARPKPFYS
HSAGGQHQPDVWFEPRYVWEVKTADLTLSPRYKAGWKEGVDPAGEKGISLRFPRFIKIRD
DKKPNEATSSRQVAEMYRKQESVTKNKGPSVDDDFEY
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgatcattaacgcgtctctgcctgctcaacgcgtcatgctagcagctgggctg
tacagaagcagctgtcggtgcctaggcaccagaaccactaattcaccagctcggcctcgc
tataaatattgcgctgttgacgccttggctctgagatttgcatcaactcaattgattcgt
tgctggccatctgcatctgcatctgccggtgcatcctccaacatggctccgaaacaggca
actctgggcaaattctttggggtcaaggcagctgcaccagcaagacaaacgacgctggcg
tttgcgaccaaggcggggaccaaggaagcagacaaggctgaagacgagggcgatgcaagc
acaaaggaaaactcggatccagagaaggattccaaaaaacgcccgcggtcacccaaaaag
aggacggaagcaaagcccaagctagctgaagaggaagacgaggctccagtttcaaaaaga
gcaaggcgaacaagagtcaagattgaggatgacgaggatgaagctcctcagtcgtcccca
aagaaagaagaagctcccagcagtccccctgctaagagaaagaggtcacggagtcccaag
tctagcccaaagtcgaggtcgcagtcgccaaaggcagccaagataaaagaggagagcgag
gatgttgccgagaaagctgcaaaggaggaggagcaatcttcagaatcagcgtcagaggct
gatagcgatgcggaaccaaaaccagctgttacggccaaagcacgcaaagctcagcaaaca
atgctccaaacgaaagaaaaagatgcatatcctgattggcagcctggcacccctgtacca
tatgcagctctttgcaagaccttttcgctcattgagctgacgacgaaacgtttaatcatc
atggagtattgttcaaagtttctgcgccaagtcatgcggctcacccctgatgatctcttg
cctaccgtcctgctcatgatcaacaagctggctcctgactacgccggcattgagctcggt
atcggtgaatccctaatcatgaaagctatcggcgaaactaccggaagaagcctccaggtc
atcaaggctgaccagaaagagattggtgacctcggtctcgtggctgtgaagagcagatcg
acccagccaaccatgttcaagccgaaagcgctgacagtaagaggcgttcatcaaggcttg
atgagtattgcgacggtcactggtaacggcgcccaaggtcgcaaagttgacggcatcaag
aagcttctatcttcttcagattctcatttgaaggagaaggtggatatcaacaaggacaag
ggcggcccaagcgaagcaaaatatattatccgattcttggaaggcaagcttcgacttggc
ttggcagaccggactgttttggtttcgttggctcaagcagttgtagcacatgaagccgag
gtgaagggaaaaatccccaccacttcagatttggaaaacggcgagtctattctcaagaca
gtttacagcgaattaccgagctacgatgtcattattccagccatgatggagcacggcatc
gccaatctgagagatcactgcaaactccggcctggcgtgcccctgaagcccatgttggcc
aaaccaacaaaagctattacagaagtcttggaccggttcgagggccaaaaattcacgtgc
gaatacaaatacgacggtgaacgtgctcagattcattatgtggccaaagatgccgctcag
gatttggacgcatctacccaaggatcgaccaaaaaaattgagtcaggtgttgcctgcatt
ttctctcgaaactcggaagatttgtccaaaaagtatcccgacgttcttgagaagctcagc
gcatggatcaaggaagacacaaagagcttcgttgtcgactgcgagactgtggcatgggat
gtggccgagaagaaagtattgcctttccagcaactcatgactcgcaagaggaaggatgta
aaggccgaagacatcaaggtcaaggtttgtgtttttgcctttgacctgctatatctgaac
ggagaagcagtggtggagaagtcgcttcgtgagcgtcgcgaactcctcagcacagcattt
gttccaacggaaggcgagtttcaattggcaactcacatgaacggccaagagctggatgag
attcagacattcttggatgagagtgttaaggcatcgtgcgagggtctgatggtgaagatg
ctggatgggacagaaagcgggtacgagcccagcaagcgaagtcgaaattggctcaaggtt
aaaaaggactatctctctggcgtgggtgactctcttgacctggtcgtcctgggagcttac
tatggcaagggcaaaaggacatcagtctatggtgctttcttgcttgcttgctacaaccct
tctaccgatgtgtatgagacggtctgcaacattggcactggcttctcggagcaagtcctc
gaagacctccatgcccagctctccgaaatcacaattgcccgccccaagcctttctactca
cactctgcaggcgggcagcatcaacctgatgtgtggttcgaaccacgctacgtgtgggag
gtcaagacggcggatttgacgctcagccctcggtacaaggctggatggaaagaaggcgtg
gatccagcaggcgagaagggcatcagtctgcgatttccccgattcatcaagattcgagac
gataaaaaacctaatgaagcaacgagtagcaggcaagttgcggagatgtacaggaaacag
gagagcgtgacgaagaataagggtccgtcagtggatgatgactttgaatattaa
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