Trichoderma atroviride: 25775437
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Entry
25775437 CDS
T10217
Symbol
TrAtP1_004640
Name
(RefSeq) uncharacterized protein
KO
K12830
splicing factor 3B subunit 3
Organism
tatv Trichoderma atroviride
Pathway
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25775437 (TrAtP1_004640)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tatv03021
]
25775437 (TrAtP1_004640)
03041 Spliceosome [BR:
tatv03041
]
25775437 (TrAtP1_004640)
03036 Chromosome and associated proteins [BR:
tatv03036
]
25775437 (TrAtP1_004640)
Transcription machinery [BR:
tatv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
25775437 (TrAtP1_004640)
Spliceosome [BR:
tatv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
25775437 (TrAtP1_004640)
Complex B
25775437 (TrAtP1_004640)
Complex C
U2 SnRNP specific factors
25775437 (TrAtP1_004640)
Chromosome and associated proteins [BR:
tatv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
25775437 (TrAtP1_004640)
TFTC complex
25775437 (TrAtP1_004640)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
PilZN3
Motif
Other DBs
NCBI-GeneID:
25775437
NCBI-ProteinID:
XP_013939582
UniProt:
G9P4R4
LinkDB
All DBs
Position
2:complement(join(5468859..5468885,5468947..5470234,5470428..5472507,5472675..5472918))
Genome browser
AA seq
1212 aa
AA seq
DB search
MATTSNMFLYSLTIQPPTNVVQAVLGQFAGTKEQLIITGAGSRLALLRPDPSQGKVITLL
SHDIFGIIRSLAAFRLAGSNKDYLILATDSGRITIIEYLPRENRFSRLHLETFGKSGVRR
VIPGEYLACDPKGRACLVASIEKNKLVYVLNRNSQAELTISSPLEAHKPGVLVISMVALD
VGYANPVFAALEIDYTEVDQDSTGEALRELETQLVYYELDLGLNHVVRKWSEPVDSTASL
LFQVPGGNDGPSGVLVCGEENITYRHSNQEAFRVPIPRRRGATEDPSRKRTIVSGVMHKL
KGSAGAFFFLLQTEDGDMFKVTIDMVEDEEGNTTGEVRRLKIKYFDTVPAASNLCILKSG
FLYVASQFGNFSFYQFEKLGDDDEELEFTSDDFPVDAQASYTPVYFYPRPLENLVLVESI
PSMNPLLDCKIANLTGEDAPQIYTVCGNGARSTFRTLKHGLEINEIVSSELPGIPSAVWT
LKLNRSEQYDAYIVLSFTNGTLVLSIGETVEEVSDSGFLTSVPTLAAQLLGDDGLIQVHP
KGIRHIRNGQVNQWDAPQHRSIVAASTNAHQVAIALSSGEIVYFEMDDDGSLAEYDDKKE
MFGTVTCLSLGEVPEGRLRSSFLAVGCDDCTVRILSLDPESTLENKSVQALTAAPTSLAI
ISMEDSSSGGSTLYLHIGLYSGVYLRTVLDEVTGELTDTRQKFLGPKQVRLFQVTVQGRT
CVLGLSSRPWLGYADPITKSFVVTPLSYVDLEWGWNFTSEQCEEGIVGIQGQTLRIFSVD
RLGDTLIQNSIPLTYTPKKMVKHPEHPLFYVIEADNHTLSPDLCAKLLADPARVNGDAKV
LSPEEFGHPRGNRRWASCISVVDPLAEDGQVLQKIDLDENEAAVSLAIVTFASQDNETFL
VVGTGKDMVVNPRSFSDAYVHIYRFEQEGRGLVFIHKTKVEEPPMAIIPFQGRVLVGIGK
ILRIYDLGMRQLLRKTQAEVAPQLINSLSTQGNRIIVGDVQQGITYVVYKQTTNKLIPFV
DDTVARWTTCSTMVDYETVAGGDKFGNIFVVRSPQKASEEADEEQAGLHLLNARDYLHGR
SHRLDLMCHLYTQDIPTSITKTSLVVGGQDVLLWSGLMGTIGVLIPFVTREDTDFFQSLE
LHLRAEDPPLAGRDHLMYRSYYAPVKGVIDGDLCERYTLLPNDKKQMIAAELDRSVREIE
RKISDIRTRSAF
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacttccaacatgttcctttactcgctgacgatccagccgccaaccaatgtc
gtccaagcggtcctgggtcagttcgcggggaccaaggagcagctcatcatcaccggtgct
gggtcacggctggctctgttgcggcctgatccgtcacagggcaaggttatcactcttttg
tctcatgacatttttggcatcatcaggtctctggcggcctttcgcctcgcaggcagcaat
aaggattacttgatcttagccactgattctggtcgaatcaccatcattgagtatcttccg
agggagaaccgatttagcaggttgcatctggagacttttggaaaatctggtgtgcggaga
gtcattcctggagaatacctcgcgtgtgatcccaagggacgtgcgtgtcttgttgcttca
atagagaagaacaagctcgtatacgtgctcaatcgaaactctcaagcggaactcacaatc
tcgtcgcctctcgaagcccacaagcctggtgtgttggtcatttctatggtggcactagac
gttggatatgccaatcccgtgttcgccgccctagaaatagactataccgaggtggatcaa
gattctactggggaagctttgcgagagctggaaacacagcttgtgtactatgagcttgat
ctcggactcaatcacgtcgtcagaaagtggtccgagcctgtagactcaacagcgtcactg
ctattccaggtaccgggtggtaacgatggcccaagcggcgtcctggtctgtggcgaggaa
aatattacatatcgccattccaaccaagaggcctttcgagttccgatccctcgacggcgg
ggagcaacagaggacccttcaagaaagcgcaccattgtttccggtgttatgcacaaacta
aagggcagcgccggcgccttcttcttcttgcttcaaacagaagacggcgacatgttcaag
gtcaccatcgatatggtggaagatgaggaaggcaataccacaggagaggtcagacgactc
aagatcaagtattttgacacagtcccggctgcgtcaaacctctgcattctgaagagtggt
ttcctctacgttgccagccagttcggaaacttctccttctaccagtttgaaaaactggga
gatgacgacgaagagctagaattcaccagcgacgactttcccgtcgatgcacaggcctcc
tacacacctgtttatttctatcccaggccactggaaaatctagttctcgtagagagcatt
ccctccatgaatcccctcctcgactgcaaaattgccaacctgaccggcgaggatgctcct
caaatttacaccgtttgtggcaatggtgctcgaagcacattccggacgctcaagcatggg
cttgaaattaatgaaatcgtatcttccgagctaccaggtatcccatcagcagtttggacg
ctgaagctgaaccggagtgagcaatatgacgcttacatcgttctctcttttaccaacgga
actcttgttcttagtataggagagacggtggaagaagttagcgactccgggtttcttact
agtgttcccaccctagctgcccagctgctcggcgacgatggtctaattcaagttcatccc
aagggtatcaggcacatccgcaatggacaggtcaaccaatgggacgctccccagcatcga
tctattgtggccgcctctaccaacgctcaccaggtggcgattgctctgagttcgggcgag
attgtctatttcgagatggacgatgatggttccttggcagagtatgatgataagaaagaa
atgtttgggacagtcacttgcttgagtctgggcgaagtccccgagggcagactgcgaagc
tcgtttcttgcagtcggatgcgatgactgtacagtccgcatattgagtctcgacccggaa
tctacgcttgaaaacaagtcagtccaagcgctgacagctgcacctacctctctcgctatc
atatccatggaggactcatcttccggcggttcaactctctacctgcatatcggcctttac
tcaggcgtgtacctacgcacagttttggacgaagttactggcgaattaacagacaccaga
caaaagttcttgggaccgaagcaggtgagactattccaagtaacagtccaaggaaggacg
tgtgtacttggtcttagctctcggccttggctcggatacgccgatcccatcaccaagagc
tttgtcgtcacaccgctcagctacgttgacttggaatggggctggaattttactagtgag
caatgcgaagaaggtatcgtgggcattcaaggacagaccttgcgcattttctcggttgat
cggcttggagacacgctgatccagaattctattcccctgacctatacgcccaagaagatg
gtgaagcatccggagcatcctctcttctacgtaatcgaagcggacaatcatactctatcc
cctgacctttgtgcgaaattgctcgccgacccagcacgtgtcaatggtgacgccaaagtt
ctttccccagaagaatttggccatcccagaggcaacagacgctgggcttcatgcatcagc
gtcgttgatcccctggctgaagatggtcaggttctacaaaagatagatttagatgaaaac
gaggccgcggtcagcctcgccatcgttacgtttgccagccaagataacgaaaccttcctt
gttgttggaaccggtaaagatatggtcgtgaaccctcgcagtttttctgacgcgtatgtc
catatctaccggttcgaacaagagggtagaggcttggttttcattcataaaacgaaggtt
gaagagcctccgatggccatcattcctttccaagggcgcgtgctggtgggcattggcaaa
atacttcgcatatacgatctcggcatgcgacaactgctgcggaagacgcaagctgaagta
gcaccacagcttattaattctttgagcacacaaggcaacagaatcattgtgggagacgtg
cagcaaggtataacatatgtcgtctataaacaaacgacaaacaagctcattcctttcgtg
gatgacaccgttgctcgatggacgacttgctcaacaatggtagattatgagacagtagct
ggaggagacaaatttggcaacattttcgtcgttcgctctcctcagaaggccagtgaagag
gccgatgaggagcaagcagggcttcacctgctaaatgcgagagactaccttcacggacgg
tctcatcgcctggatctaatgtgtcacctctacacacaggacattccgacgagtattacc
aaaacgagtcttgttgtcggaggacaggatgttctgttgtggagtggccttatgggcaca
attggtgtcctaattccttttgtcacccgagaagatacagattttttccaaagcttagaa
ctgcatctgagggccgaagatcctccactcgcaggccgagaccatttaatgtatcgcagt
tactacgcacccgtgaagggcgtcatcgatggcgatctctgtgagagatacacactgctt
ccaaatgataagaagcagatgattgcagccgagctggaccgctctgtccgagaaattgag
cggaaaatttcggatatccgaactcggtctgcattttag
DBGET
integrated database retrieval system
