KEGG T10217: 25775973

Trichoderma atroviride: 25775973

Entry

25775973          CDS       T10217

Symbol

TrAtP1_001156

Name

(RefSeq) uncharacterized protein

K03012

DNA-directed RNA polymerase II subunit RPB4

Organism

tatv Trichoderma atroviride

Pathway

tatv03020

RNA polymerase

tatv03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:tatv00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    25775973 (TrAtP1_001156)
  09124 Replication and repair
   03420 Nucleotide excision repair
    25775973 (TrAtP1_001156)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tatv03021]
    25775973 (TrAtP1_001156)
   03400 DNA repair and recombination proteins [BR:tatv03400]
    25775973 (TrAtP1_001156)
Transcription machinery [BR:tatv03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     25775973 (TrAtP1_001156)
DNA repair and recombination proteins [BR:tatv03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      25775973 (TrAtP1_001156)

SSDB

Motif

Pfam:

RNA_pol_Rpb4 DUF6036 Spexin YwtC

Other DBs

NCBI-GeneID:

25775973

NCBI-ProteinID:

XP_013941745

UniProt:

G9P2W3

LinkDB

Position

1:complement(join(3205568..3205689,3205756..3205883,3205999..3206177))

AA seq 142 aa
MSNRTSRPKPPPPGNEEASASLNLGEFQHVDTLTLSEAALVLNALVAKRRNDRKNVNETE
MLNQTLNYLDHFARFTQKENVEAVERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSL
ADKIKDEDLQDLLDEISKLQNR

NT seq 429 nt +upstreamnt +downstreamnt
atgtcaaatcgcacatcacgcccgaagccacctccgccaggcaacgaggaagcctctgcg
tcgctgaacctgggcgagtttcagcatgtcgatactctcacgctttcagaagccgcgctg
gttctcaatgcgctggttgcgaagcgccgaaacgatcgcaagaatgtcaacgagacggag
atgctgaaccaaactctcaactatctggatcactttgcgcggttcacgcagaaggagaac
gtcgaggctgtggagcgtctgctcagtgctcacaaggacctggccaagtttgagcgcgca
caacttggatcgctctgctgtgaaaacgctgatgaagccaagactctgattccatctctt
gcggacaagatcaaggacgaagacctacaagacctactcgatgagatttcgaagcttcag
aaccgataa

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