KEGG   Trichoderma atroviride: 25776083
Entry
25776083          CDS       T10217                                 
Symbol
TrAtP1_008956
Name
(RefSeq) uncharacterized protein
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
tatv  Trichoderma atroviride
Pathway
tatv03020  RNA polymerase
tatv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tatv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    25776083 (TrAtP1_008956)
  09124 Replication and repair
   03420 Nucleotide excision repair
    25776083 (TrAtP1_008956)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tatv03021]
    25776083 (TrAtP1_008956)
   03400 DNA repair and recombination proteins [BR:tatv03400]
    25776083 (TrAtP1_008956)
Enzymes [BR:tatv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     25776083 (TrAtP1_008956)
Transcription machinery [BR:tatv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     25776083 (TrAtP1_008956)
DNA repair and recombination proteins [BR:tatv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      25776083 (TrAtP1_008956)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_5 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4
Other DBs
NCBI-GeneID: 25776083
NCBI-ProteinID: XP_065970199
LinkDB
Position
4:complement(join(4736791..4736953,4737015..4738222,4738331..4740724))
AA seq 1254 aa
MADYEDDYDYENYGDEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNE
YSTITLDQPNPPSPPGRTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTY
ASPLYIKITKKVSAAVEREVPLHEMDDAQQEQYARTGENPTKLEWEEEENGEDDNLGKSD
DWKDMVFVGKLPIMVKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSA
ANIVQVFKKAQPSAYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPF
VKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIG
KRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRR
EPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTL
SNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ
LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLR
YPHATKIFVNGVWVGIHQDPKHLVNQVLDTRRKSYLQYEVSLIREIRDQEFKIFSDAGRV
MRPVFTVQQEDDPETGINKGHLVLTKDLVNRLAKEQAEPPEDPSMKLGWEGLIRAGAVEY
LDAEEEETSMICMTPEDLELYRLQKAGIATDEDIGDDPNKRLKTKTNPTTHMYTHCEIHP
SMILGICASIIPFPDHNQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFL
KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTE
VFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAETQDLGTRTTMH
QRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGV
TYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTV
DSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQ
IMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPI
ANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMYTNRSGASVR
NT seq 3765 nt   +upstreamnt  +downstreamnt
atggctgattacgaagacgattacgactatgagaactatggggatgaggatgagggcatc
acgcccgaggattgctggactgtgatttcctccttcttcgagaccaagggcctcgtatca
cagcagaccgactcctttgacgagttcacccagacgacaatccaggatctcgtcaacgaa
tactccaccatcacactcgaccagcccaatcctccttcgccacctggtcgaacgatagcc
cttcgccgatatgaaatcaaatttggaagcgtcatggtatcacgtcccactatcagtgag
acggatggaactgtgacgtctttgctcccttacgaatgtcgagaccgcaacctgacttac
gccagtccgctgtacatcaagatcaccaagaaagtgtctgcggccgtcgagagggaggtt
ccgctgcatgagatggatgatgcccagcaggaacagtatgcaaggaccggagaaaacccc
acaaagctggaatgggaggaggaagagaatggcgaagacgacaatctcggcaagtctgac
gactggaaggacatggttttcgttggcaagctgcccatcatggtcaagtccaagatttgt
catctgagccgtgaacaggatgacagcctgttcctcgtcaacgagtgcccttatgaccaa
ggaggctacttcgttatcaacggtagtgaaaaggtcctcatcgcccaggagcgttccgcc
gcaaacatcgtccaggtcttcaagaaggcccagcccagtgcctatacctacacggccgaa
atccgaagtgcgctggaaaagggatctcgactcatctccagcatgatgctcaagttgtac
ggcaaaggagactctgcgcgaggtggttttgggcaaactattcacactaccctgcctttt
gtcaagtcagatcttcccgttgccattgttttccgtgccttgggcgtcgtttctgatgag
gacattctgaaccacatctgctacgaccgaaacgacagccaaatgctcgaaatgcttcgg
ccttgcattgaagaagccttttgtgttcaggatcgagaagttgcccttgatttcatcgga
aagcgaggcaaccgtgatcaagccggcctcggtcgtgagaagcgtgttcgtgtagcaaag
gacattctccagaaggagacgcttccccacatttcccagactgaaggcagtgagaccaga
aaggcattcttccttggatacatggtgcacaagctattgcaatgcgcacttggaagacga
gagcccgacgaccgagaccactttggaaagaagcgtctagatctggcgggtccactgctg
gccaagctgttccgtggtatcatgcgcagaatgaatacagagctggccaactacctcaga
cgatgtgttgagggtaaccgccacttcaaccttgctgttggcattaagcccggcacactt
tccaacggactaaagtactcgctcgccactggaaactggggtgaccagaagaaggcaatg
agctcgaccgcaggtgtctcacaggtgcttaaccgttacacttttgcttctacactttcc
catttgcgccgtaccaatacacccatcggaagagatggtaagctggcgaagcctcgacag
ctccacaacacacactggggtttggtgtgcccggctgagacccctgaaggtcaagcttgt
ggtctggtcaagaatttgtctctcatgtgctacgtcagtgttggatctccttctgagcct
ttgatcgagtttatgatcaacagaggtatggaagtcgttgaggagtatgagccactgagg
tatccccatgctacaaagatctttgtgaatggtgtctgggttggaatccaccaagacccc
aagcatctggtaaaccaagttttggatactcgtcgcaaatcctatctgcagtacgaggtc
tctctgatcagagaaattcgagaccaagaattcaaaatcttctctgacgccggccgtgtc
atgcgtcccgtcttcactgtacagcaggaagatgacccggaaacgggtatcaacaagggc
cacctggttttgaccaaggaccttgtcaatagactggccaaagagcaggctgagcctcca
gaagacccaagcatgaagctcggatgggaagggctgattagagctggtgcggtggaatat
ctcgacgccgaggaagaagaaacgtccatgatttgcatgacaccggaggatctggagctc
tatcgtcttcaaaaggccggcattgccacggatgaagacataggagacgatccaaataag
cgtctcaagaccaagacaaatccgacaactcacatgtatacgcattgcgagattcacccg
agtatgatcttaggtatctgtgctagtatcattcctttccccgatcacaaccagtctgcc
atgggtaaacaagccatgggcttcttcctaaccaactattctcggcgtatggacaccatg
gccaatatcctctactaccctcagaaaccgctgggcactactcgttctatggagtttttg
aaattccgtgagctgccagccggacaaaacgccattgtagcaattgcttgttactctggc
tataaccaagaagattccgtcattatgaaccagagtagtattgacagaggtctcttccga
agtcttttcttccgatcatattcagatcaagagaagaaggttggcttgaactacacggaa
gtgtttgagaagccattccaccaaaacactcttcgcatgaagcacggcacatatgacaag
ctggacgaagatggtatcgttgctcctggtgttcgtgtgtcaggtgaggacatcatcatc
ggcaagacagcaccaatcgacgccgagacacaggatcttggaaccaggacgaccatgcac
caaagacgcgatatctcgacgcctttgcgaagtaccgagaatggtatcgtcgaccaggtt
atcgtgacggtgaacgcggataatgttaaatatgtcaaggtccgtgttcgaacgaccaag
attccccagattggagacaagtttgcctctcgtcacggtcagaagggcactattggtgtt
acctaccgacaggaggacatgccattcacaagagaaggtctcactccagatatcattatc
aacccccacgccattccgtctcgtatgacaattgctcacttgattgagtgtctcctgagt
aaggtctctacgctggaaggtatggagggtgatgctactccctttacggatgtcaccgtc
gattcagtctctgagctcttgcgaaagcacggctaccagtctcgaggcttcgaaatcatg
tacaacggccatactggacgcaagctaagagcacaagtattctttggaccgacatactac
cagcgactccgccacatggtggacgacaagatccatgccagagctcgtggtcctgtgcag
atcatgacacggcagccagtggagggtcgtgctcgagatggtggtctccgattcggagaa
atggaacgtgattgtatgattgcacacggtgcagcgtccttcctcaaggagcgattgttt
gaggtgtcggacgccttccgagttcacatttgcgagatttgtggactcatgacacccatt
gctaacttatccaaacaatcgttcgagtgtcggccatgcaagaacaagacaaagattgca
cagattcacattccttacgctgccaagctcttattccaggagctccagtcaatgaacatt
gcagctagaatgtacaccaaccggtctggtgcatctgttcggtag

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