Trichoderma atroviride: 25776101
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Entry
25776101 CDS
T10217
Symbol
TrAtP1_003499
Name
(RefSeq) uncharacterized protein
KO
K10755
replication factor C subunit 2/4
Organism
tatv Trichoderma atroviride
Pathway
tatv03030
DNA replication
tatv03410
Base excision repair
tatv03420
Nucleotide excision repair
tatv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
25776101 (TrAtP1_003499)
03410 Base excision repair
25776101 (TrAtP1_003499)
03420 Nucleotide excision repair
25776101 (TrAtP1_003499)
03430 Mismatch repair
25776101 (TrAtP1_003499)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tatv03032
]
25776101 (TrAtP1_003499)
03036 Chromosome and associated proteins [BR:
tatv03036
]
25776101 (TrAtP1_003499)
03400 DNA repair and recombination proteins [BR:
tatv03400
]
25776101 (TrAtP1_003499)
DNA replication proteins [BR:
tatv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
25776101 (TrAtP1_003499)
DNA Replication Termination Factors
ELG1-RFC complex
25776101 (TrAtP1_003499)
Chromosome and associated proteins [BR:
tatv03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
25776101 (TrAtP1_003499)
DNA repair and recombination proteins [BR:
tatv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
25776101 (TrAtP1_003499)
Check point factors
HRAD17(Rad24)-RFC complex
25776101 (TrAtP1_003499)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
AAA_lid_RFC1
DNA_pol3_delta2
AAA_22
AAA_assoc_2
SLFN-g3_helicase
AAA_11
AAA_28
AAA_14
DNAX_ATPase_lid
AAA_16
Mg_chelatase
AAA_24
AAA_5
AAA_19
RNA_helicase
Gp44_lid
RuvB_N
AAA_7
ABC_tran
AAA_18
Rad17
Motif
Other DBs
NCBI-GeneID:
25776101
NCBI-ProteinID:
XP_013943439
UniProt:
G9NW88
LinkDB
All DBs
Position
2:join(2191761..2192540,2192613..2192777)
Genome browser
AA seq
314 aa
AA seq
DB search
MLFYGPPGTGKTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTN
PPPSYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL
ASRCSKFRFKSLDQGNAKRRLESIAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQSAAR
LVGAKPLEKDGEGDEAMDVDKRPVTVKIVEDIAGVIPGSTINDLVKAMRPSTSAEAYRSI
SKVVEDLVADGWSAGQVVNQLYQEIVFDEIVPDVQKNKIVLVFSEVDKRLVDGADEHLSI
LDLAMRISAIMSEK
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgctattttacggccctcctggcacaggcaaaacatccaccatccttgcccttgcaaaa
gagctttatggtccggagatgatcaagtcacgagtccttgagctgaacgcgtccgacgag
cgtggtatctcgattgttcgacagaaagtcaaagattttgcacgaatgcagttgaccaac
ccgccgccatcctacaaagacaaatatccctgcccgccgttcaaaatcatcattctagac
gaggccgattccatgacgcaagatgcacagagcgctttgagacgaacgatggagacatat
agcaaaatcacacgcttttgcctaatctgcaactatgttactagaattatcgaccccctg
gcgagtcgatgcagtaaatttcgcttcaagagcttggatcagggcaatgcgaagaggcgg
ttggagtcaatagcagaggctgaaggggttacgcttgaagatggtgctatcgatgccctt
ataaagtgcagcgagggtgatctgcgaaaagccattacctttctgcagagtgctgcacga
ttggttggagcgaaacctttagaaaaggacggcgaaggcgacgaggctatggatgtagac
aaaaggccagtgactgtcaagattgttgaggacatcgctggtgtgatacccggttcaaca
atcaacgatctcgtcaaggctatgcgcccaagtacgtcagcagaggcatatcggtccata
tccaaggtggtagaggatctggtcgcagacggctggagtgctggtcaggttgtaaaccag
ctgtaccaagagatagtctttgatgaaattgttcctgatgtccaaaagaacaaaatcgtt
ctcgtcttctctgaagtcgataagcgattggtcgatggagcagacgagcatctatcaatt
cttgatctggcaatgaggatatcggccatcatgtccgaaaaatga
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