Trichoderma atroviride: 25776172
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Entry
25776172 CDS
T10217
Symbol
TrAtP1_012563
Name
(RefSeq) uncharacterized protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tatv Trichoderma atroviride
Pathway
tatv03022
Basal transcription factors
tatv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
25776172 (TrAtP1_012563)
09124 Replication and repair
03420 Nucleotide excision repair
25776172 (TrAtP1_012563)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tatv03021
]
25776172 (TrAtP1_012563)
03400 DNA repair and recombination proteins [BR:
tatv03400
]
25776172 (TrAtP1_012563)
Transcription machinery [BR:
tatv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
25776172 (TrAtP1_012563)
DNA repair and recombination proteins [BR:
tatv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
25776172 (TrAtP1_012563)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
COMPASS-Shg1
Motif
Other DBs
NCBI-GeneID:
25776172
NCBI-ProteinID:
XP_013943834
UniProt:
G9NU11
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All DBs
Position
7:complement(join(1714255..1716044,1716097..1716235))
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AA seq
642 aa
AA seq
DB search
MASLTGHTLFKKKEGILSFSSDHGAITWTPASGGPATISLPINNITNLQQTPDSSPKVML
KIFEKSESGNDPVTYLFHFNTQEAKVEAQAIKDLLSRLLADLRSTDANVSKLGAATAAPA
ANGDGSASASATLGSSNGINSQSMSPKWFDDSQLKTNIELQQSLMKKDKSLHQTYMSAIS
TKPDSMTSAAFNSQFWSMRINLLRAHAIEINQKKGAYNVLSTVKPRTVDGELKLNISVEQ
VQMIFAQHPLIKRIYNETVPRVSEAEFWSRFFLSKLAKRLKGERVTDNDPADAIFDKYNA
DGNALDAHAKTMSQPVPHIIDIEGNEENQGGFKGGNAKDVEMRPRANIPIVRTLNNLSEK
ILANVPPSDSTTIDSKGLYDTSRELILRDLRGEGEEKRIMLNIKERNNFFSSKDSPSLKN
RDIFGNQLPGEILAKMRNLYAAGNDKATDNGLQINIDLDVDSDSDKESKPGVNTARDAVK
EAEKDVMAGIYQQRSQKYGGASDDSSPMGIPSQISEKSALTHATTIEFLHQFWDGFLSGD
PDRAMEVQYLAESLARSTTRIQAVADEAEAERDNIIQKRKQEIRSHFERTGKKIRWKPDM
VGGGRDAVSKIMQPTLDALRRAQDSYSKALGEENIQISTENA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggccagtctaacgggccacactcttttcaagaagaaagagggcatcctctccttcagc
agtgaccatggagcgataacttggacaccagcatcgggaggccctgcaacgatctcacta
ccaatcaacaatataactaatctgcagcaaacccccgacagctctccgaaggttatgctt
aaaatattcgaaaagtccgagagcggaaacgaccccgttacatacctctttcatttcaac
acccaggaagccaaggtagaggcgcaagcaatcaaagatctcctttctcgactcttggcc
gatctcagaagcaccgatgcaaacgtgtccaagttaggtgctgccaccgcagcgcccgct
gctaatggagatggctcagcaagcgcctctgccactttaggatcctccaacggcataaat
tcacaatcaatgtctccaaaatggttcgacgatagccaattgaaaacaaacattgagcta
cagcaatctctcatgaaaaaagacaagagtctgcatcaaacttacatgagcgctatatca
actaagccagattcgatgacaagtgccgccttcaattcccaattctggtccatgaggata
aatctgttgagagctcatgctattgaaatcaaccagaaaaagggggcatataatgtcctt
tctactgttaaaccccggactgttgatggagagttaaaattgaatatcagcgtcgaacag
gtccaaatgatcttcgctcagcacccgttaatcaaacgaatttataatgaaaccgtaccg
agagtctctgaggcggaattctggtcgcggtttttcctcagcaagctagccaagagactc
aagggagaacgcgtcacggacaatgaccctgcagatgccatctttgacaaatacaatgcc
gatggcaatgcgcttgatgctcatgcgaaaactatgagccagcctgttcctcacataatc
gacattgagggtaatgaggagaatcagggaggattcaaaggaggcaatgccaaggatgtc
gagatgcgacctagagctaatattcccattgttaggacgcttaacaacttgagcgagaaa
atcttagccaatgttcctccctcggacagcacaacgattgattcaaagggactttacgat
acgtctcgagaattaatcctacgagatttgaggggagaaggggaggaaaaacgtattatg
ctcaatatcaaagagaggaataactttttctcgtccaaagattccccgtcgctaaaaaat
agagacatttttgggaaccagctgcctggcgagatactcgccaaaatgcgaaatctatat
gcggccgggaacgataaggccacagacaatgggcttcaaattaacatagatctcgacgta
gatagtgatagcgacaaagagtcgaagcccggggtcaataccgcccgtgatgcagtcaaa
gaggcagaaaaggatgtcatggccggtatataccaacaacgctcccaaaaatacgggggc
gcctcagatgattcctccccgatgggaatcccctcccaaatttccgaaaaatccgcgctt
actcatgccacaaccattgagttccttcaccagttttgggatggttttctttctggcgat
cctgatcgggcgatggaggttcaatatttggctgaatcgctagcaaggtccacaacgcgc
atccaggccgtagctgacgaggctgaggctgagcgcgacaacatcattcagaagcgcaag
caagagatccgtagccactttgaacgcacaggaaagaagatccggtggaagccagacatg
gtgggcggcggccgtgatgctgtctccaaaataatgcagccaacgctagatgcactacgg
cgagcacaggactcttattccaaggcactgggagaagaaaatatccaaatatcaacggag
aatgcgtaa
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