Trichoderma atroviride: 25776379
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Entry
25776379 CDS
T10217
Symbol
TrAtP1_010824
Name
(RefSeq) uncharacterized protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25776379 (TrAtP1_010824)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25776379 (TrAtP1_010824)
Enzymes [BR:
tatv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
25776379 (TrAtP1_010824)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25776379 (TrAtP1_010824)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
25776379 (TrAtP1_010824)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_LRWD1
LRR_1
DUF7321
Motif
Other DBs
NCBI-GeneID:
25776379
NCBI-ProteinID:
XP_013947741
UniProt:
G9NIG8
LinkDB
All DBs
Position
6:join(637862..638759,638836..640031)
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AA seq
697 aa
AA seq
DB search
MYSQSHQQGHNARLNGAGRGMPNMMYNFQQHTQHQHPAQPQHHQGLQHEHIIPNANGLGH
HTSFTAGILQTSATFNSNALSNGHATNSRSGQAPQNEMWQEQLRLHKEAERAHAAMTEQQ
QPHYYARLKASENRGIGGPPPSNGKTQADSENDPADRRRPLNVEKGTTRQDWHNMDMSGQ
GLRNLAPELFRYQFLNELYIASNKLTRIPNSIGELRQLRHLDASYNQINELPPELGMCTF
LKQLLLFNNNLQELPFELGSLHQLEMLGIEGNPLEPSIKQEIVEKGTKSLINALMEGAPI
PLPPTPRKEIIIQEDVPEALERIKVFSWNILCDKYATTQTYGYTPTGALSWEYRKNCILE
ELRMREADFLALQEVSTDAFKEDLSPELAQMDYRGVHWPKSRAKTMSEKDAQTVDGCAVF
YKQSKFILLDKQLIEFATIAINRPDMKNQHDVFNRVMPKDNIAVICFFESRLTGARIILV
NAHLTWDSALADVKLIQTGILMEHVTKLAEKYARWPAVKDKKMITLPRSDDPDEPPPPPQ
IEPGPSQEYRSNTEIPLLVCGDFNSTRDSSVWELMSLGRVEPEHKELNNFHYGSFTRDGI
DHPFSLRDSYAPIQNTPDELPFTNYTPGFADVIDYIWYSANTLEVVELLGPPDPTYMKRI
PAFPNWHFPADHIQIMSEFVIKSRKDKKQASEREQQH
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtactcacaaagccaccagcagggacacaatgcccggctgaatggagcggggcggggg
atgcccaacatgatgtacaattttcagcaacacacacaacatcagcaccccgcccagccc
cagcatcaccaaggcctgcagcatgagcacatcatccccaatgccaatggattgggtcac
catacgtccttcaccgctggcatcctccagacttctgccacattcaactccaatgccctc
tccaatgggcacgcgaccaactcaaggtctggccaggccccgcagaatgaaatgtggcag
gaacaattgcggcttcacaaggaggctgagagggcacacgctgccatgaccgaacagcag
caaccgcactactatgctaggctcaaggcatcagaaaacagaggcataggcggccctccc
ccgtccaacggcaaaacccaagcagacagcgagaacgaccccgcagataggagaaggcct
ctgaacgtggagaagggcacgactcgccaagactggcacaacatggatatgagcggccag
ggacttcgaaatcttgcccccgaactgttccggtaccagttcctcaacgaactctacatt
gcttccaacaagcttacgcgcattcccaactccattggagagctgcgccagctccgacac
ctcgatgcctcctacaaccaaatcaatgagctgccaccggaactgggcatgtgtactttc
ctgaaacagctgctcctcttcaacaacaacctccaggaacttccctttgagctaggttct
cttcatcagctggaaatgctcggcattgaaggcaacccattagagcccagcataaaacag
gaaatcgtggaaaagggcactaagagcctgatcaatgcgttaatggaaggagctcccatt
cccttaccccccacaccgcgcaaagaaatcatcatccaggaggacgtacccgaagcatta
gagaggatcaaggtcttttcttggaatattctatgtgacaagtacgcgacaacgcagacc
tacggatacacacccactggggccctgagctgggagtatcggaaaaattgcatcttggag
gagctccggatgcgcgaagccgacttcctcgcactccaagaggtttctaccgacgccttc
aaggaggacctcagcccagagctggcgcaaatggactacaggggcgtgcattggcccaag
tcccgagccaagacaatgtctgaaaaggatgcgcaaaccgtcgacggctgcgcagtcttt
tacaagcagagcaagttcattctgctcgacaagcagctaattgaattcgctacgattgcc
attaaccgacccgacatgaagaaccagcacgatgtgtttaatcgggtcatgcccaaggac
aacattgctgttatttgcttctttgagtcccggctgacgggtgctcgcattatcctagtc
aatgcacatctgacctgggattcagctctggcagatgtcaagctgatccagacaggtatt
ctcatggaacatgtgacaaagctcgcggagaagtatgcaaggtggccagccgtcaaagac
aagaagatgattacattgccgaggtctgatgaccctgatgagccgccgccgccacctcaa
atcgaacccggcccgagtcaagaatatcgatccaataccgagattcctctgttagtctgt
ggcgacttcaactcaaccagagactcttcggtgtgggagctcatgtctttgggccgtgtg
gagccagaacacaaggaactcaacaactttcactacggaagcttcacacgcgacggtatc
gaccaccccttcagcttacgagactcctacgcacccatacagaacacaccagacgagctg
ccctttactaattacactcctggatttgccgacgtcattgattacatctggtattcagcc
aatacgttggaggttgttgaactgctgggacctcccgacccgacatatatgaagcgaatc
ccggcgttccccaactggcacttcccggccgatcacattcagatcatgtctgagttcgtc
atcaagagccgaaaagacaagaaacaggcatcagaacgcgaacagcagcactga
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