Trichoderma atroviride: 25777448
Help
Entry
25777448 CDS
T10217
Symbol
TrAtP1_001131
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25777448 (TrAtP1_001131)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tatv03000
]
25777448 (TrAtP1_001131)
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25777448 (TrAtP1_001131)
04121 Ubiquitin system [BR:
tatv04121
]
25777448 (TrAtP1_001131)
Enzymes [BR:
tatv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
25777448 (TrAtP1_001131)
Transcription factors [BR:
tatv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
25777448 (TrAtP1_001131)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25777448 (TrAtP1_001131)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
25777448 (TrAtP1_001131)
Ubiquitin system [BR:
tatv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
25777448 (TrAtP1_001131)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Rtf2
SET_assoc
Prok-RING_4
zf-UDP
Baculo_IE-1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
25777448
NCBI-ProteinID:
XP_013941764
UniProt:
G9P337
LinkDB
All DBs
Position
1:join(3138950..3138993,3139072..3139138,3139192..3139304,3139370..3141102,3142084..3144365)
Genome browser
AA seq
1412 aa
AA seq
DB search
MAPQDSFIEEEEDVCPLCIEEFDLSDRNFRPCPCGYQVCQFCFNNIKNNMNGLCPACRRP
YDEKTIQWKVVTTEEVAEFRANIQKNQRKRVQEQRQKEAQKREAEKENRKNLIGVRVVQK
NLVYITGLAPTVREDELLKTLRKPEFFGQYGAIQKISISNRKSSDGQHHSLGIYVTFEKP
EEATRCIQAVHGSQNGDRILKAQYGTTKYCSAWLKNEKCNNPGCMFLHEQGDEEDSYTRQ
DLSSMNGIHTQRPLPSGNNGSFRTTPRQQVSQPTLTPMSQSMARSSSKDGSDYGLDGSAL
PSSANWARNPQRSRRGSHATSGAPSSPAASASLPTTTEIAQAAVEDTETSSSASQPLEDD
KASSKDPTEELQGLPPKNSLATILHALQSCTFSSFVTPQANELDPPLFDIRGGEKRKAMR
EDDDARISGDQKNAAEGQVPSESEAETGGSLALGGEPEERDMAGDGQAFEHRHINTFPPI
QRSNADTLFGPALSGSNFNPGTNQMGRGIIPQQLMSLRPQSGFGEQVPSSLSGQTAFPSQ
GHNRQSSRFSFMADSPPAATNLKFTANPRVMGQQSSMLPASLQSSGNSHFFGSSMPAPPP
GLKSTNTPPNIFGQGFGGSAFGTATKDSSGDLLQSLIGRSRGGGNQPHDGGKHNDLQLSD
EAKLSVDALVSDDSSPAVANAEPRFHQTSYLSISDVPNPNDIRIQGQLQRAQVPLAMPYV
QPTVSVNDPTLSKKPASKSNILNQNVDLRTKANAAKDSFPTAVFGSWPAPTKGPVLEDKD
FPALGAPKANEVLGAGTGSIPSKAVVLKAIPAAKKPNENFPESPQEDQRDGLYAEFQPIK
GSQIKTLAQSAPNFGATSFQPKEGAERLDEFAETSRFPPLPTPSGAGSATVIASRGMPKT
LRVVPSSVKIEARSASPSPAPISSVVVSATGKPGNSHRPGTPASEMISDTASITSASVSI
SRAGSPPLSKIGSAPVRGTTKSQQRKQRKDVLKQETKILAETPKTETTEHAPVIGRKKKQ
KKEKPPKESNASSSAATPIEPPREEMETRSKGNRKQITDDNHQGDSKNEGTRYSHGATLD
SGSSEKEIQETATALPASSLLGTSESTDKALERPQSSPASVFADIKESLWTAAIDRLQLL
KPVSSNSSRLDNNASNAIGKKEDCKECSCRCGEMQDADLAALRAGRPVRKQFHTDGSRML
ITPHGDCIRGLTPEEEDTFLALQTAIAATAENPAAFVAPRHQPSSGAFSLIKGRAVPNGR
PNIFPSTVQPQSQDPIGKLQREDALSYINQYVLPRLSLGATSMGFPKGASSTRDSASLNS
LAPYFYGPDAAAGVGIYSTPESARAIQDFAAPGMSLDEISKGAAASSIGNMPLMSVEDAE
AALIAAKRETEKLEKGLNLVIKRNRRLLLLGA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggcaccccaagattctttcatagaagaagaagaagatgtctgtcctctttgcatcgaa
gaatttgatttgtcagatcgaaactttcgaccttgcccgtgtggctaccaggtctgtcag
ttttgtttcaataacatcaagaacaatatgaacggcctatgtcctgcgtgtcgacgacct
tacgatgaaaaaaccatacagtggaaagtcgtgacgacagaagaagttgccgagttccgt
gccaatatacaaaagaaccaaagaaagcgagttcaagaacaacgtcaaaaggaggctcag
aagcgcgaggccgagaaagagaatcgcaagaaccttattggagtacgtgtcgtgcagaag
aatctcgtttatattacaggtctggcacctaccgttcgtgaagatgaactcctcaagacc
ctcagaaagcccgagttcttcggtcaatacggagctatccaaaagatttcaattagtaat
cgaaagagctcagatggtcaacatcattcgttgggcatctacgtcacttttgaaaagccc
gaagaagcaactcgatgtatccaagcagtccacgggtcacaaaatggtgataggatattg
aaagcccagtatggaacgacgaaatactgttcggcatggctcaaaaatgaaaaatgcaac
aacccaggctgcatgtttctacacgaacaaggtgatgaagaggatagctacacgcgccaa
gatctatcgtctatgaacggcatccacacacaaaggccgctacctagcggaaacaatggc
tctttccgtacaacccctcggcaacaagtctcacaaccaaccttaacacccatgtcacag
tctatggcacggtcttcgagcaaagatggctcggattatggactggatgggtctgccttg
ccttcatcagccaactgggcgcgaaatccgcagcgaagccggagaggcagccatgcaacc
agcggcgctccatctagtcctgctgcctcagcctccttacctacgacgacggagattgcc
caagcagccgtggaagatactgaaacctcctcctctgcatctcagcctctggaagatgat
aaagcgtcaagtaaagatcctactgaagaactacagggactaccaccaaagaactcgctg
gcgaccattctgcatgcgctacagagctgcacattttcaagctttgttaccccacaggcg
aatgaactagaccctccgttgttcgatatccgaggtggcgaaaaacgaaaagcaatgcgt
gaggatgatgacgcccgaattagcggcgaccagaagaatgctgcagagggccaagtccct
tcggagagcgaggcagagactggtggcagccttgctcttggtggcgaaccagaagagcga
gatatggctggtgatgggcaagcgtttgagcaccgacacatcaacacattcccccctatc
caaagaagcaatgccgatactttattcggccctgctctcagtggctcgaatttcaaccct
ggtacaaaccaaatggggcgaggcatcatccctcagcagctgatgtcacttcggcctcag
tcaggattcggtgaacaagttccttctagtctgtccggccagactgcttttccaagtcaa
ggtcataatcgtcaatcatctcgatttagctttatggctgatagcccgccagcagcaacc
aatctcaaatttaccgcgaaccctagagtaatgggccagcagtcatcaatgttgcctgcc
tcgttacaatcttcgggcaacagccactttttcgggagctctatgcctgcccctccacct
ggactaaagtccactaatacgccaccgaatattttcggccaaggatttggtggttcagca
ttcggcactgcgacgaaagactcgtccggcgatttactgcagagtttaattggcagaagc
cgaggcggcggtaaccagcctcatgatggtggaaagcacaatgacttgcaattatcagac
gaagcaaagttgtcagtggacgcactcgtctcagacgattcatcaccggcggtagctaac
gctgagccccgttttcaccaaacttcctacttaagtatatccgatgtgcccaaccccaat
gatatacgaattcagggccagctacagagggcgcaagtgccgctggctatgccttatgtt
caacccactgtttcggttaatgatccaactctatccaagaaaccggcttcaaaatcgaat
atacttaaccaaaatgtagatctccgcaccaaagccaacgcggcaaaagattcttttcct
accgcggtgtttggttcttggcctgcaccaaccaaagggcctgtactcgaagacaaagat
ttccctgctctaggtgcgccaaaagcaaacgaggttttaggtgctggtaccggctcaatt
ccctctaaagctgtcgtgttgaaagccataccagcagcaaagaaacccaatgaaaacttt
ccagagagcccgcaagaagatcagagagatggtctttacgcagaatttcaacctataaaa
ggcagccagattaaaaccttggcacagtctgctccgaactttggagctacctccttccaa
ccaaaagaaggggccgaaaggttggatgaatttgcagaaacttctagatttccgcctttg
cctactccttctggagctggtagtgccacggtcatagcatcgcgaggcatgccgaaaacg
ttgagagtagttccttcatcagtaaagattgaagctcgctcagcttcaccgtcaccggcc
cccatctccagcgtggtggtatccgcgacggggaagccgggaaactcgcaccgacctggc
actccagctagcgaaatgattagtgacaccgcctctatcacttcagcttcggtttccatc
tcccgggctgggtcccctccccttagcaaaattggcagtgccccagtacgaggaaccacc
aaaagtcaacagcgcaagcagcgtaaagacgtgttgaaacaagaaacaaaaattctggct
gaaacacccaagaccgaaacaacagaacatgcccctgtaattggaaggaagaaaaaacag
aagaaggaaaagcctcccaaagaatccaatgcttcatcttcagcagcgactcctatcgaa
ccacccagagaagaaatggaaacacggtccaagggcaatagaaagcaaataacggacgac
aatcatcaaggagactcgaaaaatgagggcacgagatacagtcacggtgccactctagac
tctgggagctcggagaaagagatacaagaaacagccaccgcgctacccgcatcatccttg
cttgggacatctgaatcaaccgataaagctctggaaaggccacaatccagccctgcatct
gtctttgctgatattaaagaatctctctggactgctgctatagatagattgcaactattg
aagcctgtctcgagcaattcatccaggctagacaacaatgcctcaaatgccataggtaaa
aaggaggattgcaaagaatgttcctgcagatgtggcgagatgcaagacgctgatcttgca
gcactgcgtgccggcaggccggtgcgtaagcaatttcatacagacggcagccgcatgctg
atcacgcctcatggagactgcatccgtgggctaactccagaagaagaggataccttcctg
gccctccaaacggccattgcggcgacggctgagaatcctgcagcctttgtggcaccaagg
caccagccgagcagcggagcattttcactcatcaagggtcgagcagtcccgaatggacgt
ccgaatattttcccttctactgtccagccgcagtcgcaagatcctatcggcaagctccag
cgagaggatgctctgagctacatcaaccagtatgtgctgcctagactaagcctcggtgct
actagcatgggatttccaaaaggggcttcttcgactcgagactctgcgagcctcaattct
ctggcaccgtacttttacggcccagatgctgctgccggagtagggatttatagcacacca
gaaagcgctcgagctatacaagattttgcagcgccaggaatgtctctggatgaaattagt
aaaggcgcggctgcaagttcaattggaaatatgccgctaatgagcgttgaggacgcggag
gctgctttgatagcagcaaagagagagaccgagaagcttgaaaaaggcctgaatctggtt
ataaagcgaaaccgcaggctactactactaggggcctga
DBGET
integrated database retrieval system
