Trichoderma atroviride: 25778451
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Entry
25778451 CDS
T10217
Symbol
TrAtP1_005859
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tatv Trichoderma atroviride
Pathway
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25778451 (TrAtP1_005859)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25778451 (TrAtP1_005859)
03041 Spliceosome [BR:
tatv03041
]
25778451 (TrAtP1_005859)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
25778451 (TrAtP1_005859)
Spliceosome [BR:
tatv03041
]
Complex B
Other components
Prp19-related factors
25778451 (TrAtP1_005859)
Complex C
25778451 (TrAtP1_005859)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_15
RPN7
AbiH
Motif
Other DBs
NCBI-GeneID:
25778451
NCBI-ProteinID:
XP_013944478
UniProt:
G9NS32
LinkDB
All DBs
Position
3:join(1875426..1875467,1875525..1875695,1875749..1877986)
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AA seq
816 aa
AA seq
DB search
MAAPVADGMDLFLVSNEDSVYEQDIVRDPTRVKPWLEYIDFKVRHGNVLEQAFVMERACI
KLPRSYKLWKLYLTFRVKHVSKLNPAVHAAEYRKVNALFEKSLILLHKMPLIWEMYLKFL
MKQPLVTLTRRTFDRALRALPITQHNRIWSLYLPFANAASGETAVKIWRRYMQVHPEDAE
DLIELLILRGAYTEAAKRYINILNDTRFSSKRGKGHYELWNEMVEMLVEHAPDIETSYEN
GVDVEGIIRSGIIRFSDQRGKLWVGLATYWIRRGSFERARDVFEEGITTVMTVRDFTLIF
DAYAEFEESIIGALMDVSNSRAGKGIENEDTDLELDIRMMRFENLMDRRPFLLNDVLLRQ
NPNNVLEWEKRVALWGDKNAEVVQTYTDAITTISPKRAVGPFHQLWANYAKFYERGGDVR
NARIIMEKAVKVPFKSVAELADMWIEWAEMELRSENFDDAARVMAKAIQAPKRSNVDYFD
EALSPQQRVHKSWKLWSFYVDLVESVSTLDEVKKVYERIFELRIATPQTVVNYANLLEEH
KYYEESFKVFERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAVEDCPPKFAK
TIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLPSTRPIYE
RAITALPDSEAKEMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNADFWTKWEQFEVQ
HGNEDTFKEMLRIKRSVQAKFNTDVNFIASQALARSLQKPEGSPGTEAVDPIAALEKQSL
APQGFVAASTGLKDMQPRQETLASNPDAIDIDGLDD
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccagtagcggacggaatggacctatttcttgtttcgaacgaagactctgtc
tatgagcaggacattgtccgcgatcccacacgtgttaagccatggctagagtatatcgat
ttcaaggttcgccatgggaacgtcctggaacaagcgtttgtgatggagcgtgcttgtatc
aaactaccgcgatcatacaagctctggaaactctatctcacctttcgcgtgaaacacgtt
tcgaagctcaatccagcagtccatgccgccgaataccgaaaagtcaacgctctattcgag
aaatcattgattctattacacaagatgccgttaatatgggaaatgtacctcaaatttctt
atgaagcagcctctggtcacgcttacccgccgaacgtttgatcgagccctccgagcgctc
ccgattacgcagcacaatcgcatatggtcgctgtatcttcccttcgccaacgccgcttcg
ggagaaactgcagttaagatttggcgacgatatatgcaggttcatccggaggacgccgag
gacctcattgagcttctcattctaagaggcgcctataccgaggcggcaaaaagatacatc
aatatcctcaacgacacacggttttcgagcaaacgtggaaaaggtcactatgagctgtgg
aacgagatggtcgaaatgctggttgagcacgcacccgacatcgaaacgagctacgaaaat
ggagttgacgtggagggcatcattaggtccggaatcattcgatttagcgatcaaagaggc
aaactttgggttggactcgcgacatattggatcagaaggggaagtttcgagcgagcccgt
gacgtctttgaggagggcataacaaccgttatgacagtcagagactttactctcatcttc
gacgcttatgctgaatttgaagaatccataattggtgctttgatggatgtttcaaactct
cgagctgggaagggcatcgaaaacgaagacacagatttggagctcgatatcaggatgatg
agatttgaaaatctaatggaccggcgtccattccttctcaacgatgttttacttcgacag
aatcctaacaatgttctcgaatgggaaaaacgggtcgcgctctggggcgacaagaacgcc
gaggttgttcagacttacacggatgccattacaactatcagcccaaagagggctgttggc
ccgtttcatcaactgtgggcgaactacgccaagttttatgaacggggtggagatgttcga
aacgcccgtatcatcatggaaaaggccgtcaaggtcccatttaaatcagtggcagagctg
gctgatatgtggattgaatgggccgaaatggaactgcgcagcgagaactttgatgatgcc
gctcgagtaatggccaaggcaattcaagcgccaaaaagatccaacgttgattactttgac
gaggccttgtctcctcagcagcgagtgcacaaaagctggaagctttggagtttctacgtg
gacttggtggaaagcgtctcaactctagatgaagtcaagaaggtgtatgaacgtatcttc
gaattgagaattgcgactcctcaaacagtcgtgaactatgccaaccttctggaggagcat
aagtattacgaagagtcattcaaggttttcgagcgtggcttggatcttttcagctatcca
gtggcttttgaactgtggaatctgtatctcaccaaggccgtcgacaggaaaattggcatt
gagagattgcgagacctcttcgaacaggcggtagaagactgtccgcccaagttcgccaag
acgatatacctcatgtatggaaatttggaggaagagcgtgggcttgcgcgccatgccatg
cggatatacgaacgagcaacgcgtgcggtttctgatgaagatcgagctgacatgttcaat
ttttacatcaccaaatcagcctccaatttcgggctgccatctacgagacccatctatgag
cgagccattacagccctcccagacagcgaagctaaggaaatgtgtctcaagtttgcagat
atggagaaacgattgggagagatcgatcgggcaagagccatctatggacatgcctcacag
ttctgcgaccctcgaacgaacgctgatttctggacaaaatgggagcagttcgaagttcag
catggcaacgaggacacattcaaagaaatgctgcgaatcaagcgcagtgtgcaagcaaaa
ttcaacaccgatgtcaacttcatcgcgtcacaagctctggcacgaagtttacaaaaacca
gaaggttccccgggcacagaggctgtcgatcctattgcggctctagagaagcagtctcta
gcaccgcagggcttcgttgctgccagcacagggctcaaagacatgcagccaagacaggaa
actttggcatccaacccagatgctattgatattgatggtcttgacgactaa
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