Trichoderma atroviride: 25778658
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Entry
25778658 CDS
T10217
Symbol
TrAtP1_011282
Name
(RefSeq) uncharacterized protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25778658 (TrAtP1_011282)
09123 Folding, sorting and degradation
03018 RNA degradation
25778658 (TrAtP1_011282)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25778658 (TrAtP1_011282)
03041 Spliceosome [BR:
tatv03041
]
25778658 (TrAtP1_011282)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25778658 (TrAtP1_011282)
mRNA degradation factors
5'-3' decay
Lsm complex
25778658 (TrAtP1_011282)
Spliceosome [BR:
tatv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
25778658 (TrAtP1_011282)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
25778658
NCBI-ProteinID:
XP_013939954
UniProt:
G9P7X2
LinkDB
All DBs
Position
6:join(2103377..2103401,2103464..2103520,2103577..2103615,2103681..2103708,2103776..2103839,2103901..2103942)
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AA seq
84 aa
AA seq
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MASQLLPLELIDKCVGSRIWVVMKGDKEFSGTLMGFDDYVNMVLEDVTEFDYSGNHTKLP
KILLNGNNICMLIPGGEGPVGAAA
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacagctgctacccctcgaacttatcgacaagtgtgtcggatcaagaatatgg
gttgtcatgaagggagacaaagaatttagtggcacgctcatgggttttgacgactacgtc
aacatggtgctggaagatgtgacagaattcgactactctggaaaccacacaaaacttcct
aaaattctgttgaacggtaacaacatctgcatgttgatccctggcggagaaggaccagtt
ggtgccgcagcttga
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