Trichoderma atroviride: 25779444
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Entry
25779444 CDS
T10217
Symbol
TrAtP1_008015
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tatv Trichoderma atroviride
Pathway
tatv03008
Ribosome biogenesis in eukaryotes
tatv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
25779444 (TrAtP1_008015)
09123 Folding, sorting and degradation
03018 RNA degradation
25779444 (TrAtP1_008015)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tatv03021
]
25779444 (TrAtP1_008015)
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25779444 (TrAtP1_008015)
03009 Ribosome biogenesis [BR:
tatv03009
]
25779444 (TrAtP1_008015)
03016 Transfer RNA biogenesis [BR:
tatv03016
]
25779444 (TrAtP1_008015)
Transcription machinery [BR:
tatv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
25779444 (TrAtP1_008015)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
25779444 (TrAtP1_008015)
Ribosome biogenesis [BR:
tatv03009
]
Eukaryotic type
Pre-60S particles
RNases
25779444 (TrAtP1_008015)
Transfer RNA biogenesis [BR:
tatv03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
25779444 (TrAtP1_008015)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_3
DUF7794
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
25779444
NCBI-ProteinID:
XP_013948274
UniProt:
G9NHM7
LinkDB
All DBs
Position
4:complement(join(2094811..2096990,2097062..2097371))
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AA seq
829 aa
AA seq
DB search
MGIPAAFRWLSNKYPKIISPVIEQTPIVTEDGITIPVDTTQPNPNGEELDNLYLDMNGIV
HPCSHPEDRPAPADEEEMMLEVFKYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRF
RSAQEAKEKEEDKQALIELLKRQNGGTFAAADSETVVKKAFDSNSITPGTPFMDILALSL
RYWCQYKLNTDPAWAKLKIIISDATVPGEGEHKIMNFVRSQRASPNYDPNTRHVIYGLDA
DLIMLGLATHEPHFRVLREDVFFQDGKNRACKLCGQKGHEANNCRGNAKPSDDPAAAEEQ
SRSLQSPVQKPFIWLHVSVLREYLAAELAVPDLPFRFDLERAIDDWIFMCCFVGNDFLPH
LPALEIREHGIDTLTTIWKTNLPSMGGYVTKDGHIDLARAQVILDGLASQENAIFKRRKE
QEDRREASNKRRKMQNEGYARNGQHGSSKIDGHADPTKGLHLFPIAASQTANSAINMTHD
MIVSRNATQDVTLANKGAASVMRDRLRADTNKNEDTSTAAAAITQPLPSSLGKRKAMDSD
DTANASPAESPSVKPLAPPEVEPVDNVRLWEDGYEDRYYQQKFHKDPQDVDFRHKVAQAY
VEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFKDLTKMEIAFEKGRISRPFEQLMSVLP
AASRHALPTVFHDLMLQKDSEIIDFYPEEFQVDLNGKKMAWQGVALLPFIDMPRLLKAVQ
GKYDLLSPEDVARNTVGKDVLLLSDSHDGLYDDILTNFYSKKQDRLRLSINTKNSNGLAG
EIEKQEDKVPHGALNYPLERRSMPDLDYDHSIRYDQTILFFFLPLVLFD
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgggtattcccgctgcctttagatggctatctaacaaatatcccaaaatcatttcgcca
gtgattgaacaaacgcctattgtcaccgaagatggcatcacgattcccgtcgacaccacg
cagcccaatcctaacggggaagagctggataacctatatttggacatgaatggaattgtc
catccatgctcgcatccagaggataggccggcaccggctgatgaggaggaaatgatgctc
gaggtgttcaaatacacggatcgtgttgtgaacatggttcgtccacgaaagattctaatg
attgctgtcgatggagttgcgccaagagccaagatgaatcaacagcgatcgcgacgattt
cgatcggcccaggaagccaaggaaaaggaagaggacaagcaagcgctgatcgaactcctc
aagcgtcaaaatggtggcacattcgctgctgcagactcggagacggtcgttaagaaagct
tttgactcaaactccatcaccccaggcaccccattcatggatattctcgccctgagtttg
cggtattggtgccagtacaagctaaacacagatccagcatgggctaagctcaaaatcatc
atatctgatgctactgtgcccggtgaaggtgaacataagatcatgaactttgtcagatct
caacgcgcttctccaaactatgaccccaacacccgccacgttatttacggtttggatgcc
gatctcatcatgttaggacttgccacgcacgagcctcacttccgagtcctacgtgaagat
gtcttcttccaagatggcaaaaacagggcgtgtaagctgtgcggccaaaaaggacatgag
gcgaataactgtcgtggaaacgccaaaccaagcgatgatcctgctgctgctgaagaacaa
agcagaagccttcagagccccgttcaaaagcctttcatttggctgcacgtttccgttctg
agagagtatctcgcggccgagttggctgtgcccgatcttcctttcaggtttgacctagag
cgggccattgacgattggatcttcatgtgctgctttgtaggtaacgactttttacctcat
ttgcctgctcttgaaattcgagagcatggcattgatactttgaccacaatctggaagacg
aatttgccgtccatgggcggttatgtcaccaaagatggccatattgatttagcgagggcg
caagtcatacttgacggtctcgcaagtcaagaaaatgcaattttcaagcgaagaaaagag
caggaagatcgccgagaggcctctaacaaacgaagaaagatgcaaaatgaaggctatgcc
agaaatggacaacatggctcctccaaaattgacggacacgccgatcctactaaagggctg
caccttttccccattgctgcatcacaaaccgcaaactcggccattaacatgacgcacgat
atgattgtcagccgcaatgcgactcaagatgtgactttggccaataagggcgctgccagc
gtaatgcgagatcgactgcgggccgatactaacaagaatgaggatacctctaccgcggcg
gcagctattactcagcctctaccttcgtcccttggaaagaggaaagctatggattccgac
gacaccgctaatgcctctccagctgaatcgcccagtgtcaaacccttggcgcctccagag
gtagagccagttgataacgtgcgcctatgggaggatggctatgaagatcgctactaccag
caaaagtttcacaaagatccacaggacgttgactttcgccacaaggtggcacaggcatac
gtcgaagggctggcttgggtattactctattacttccaaggatgtccgtcttgggagtgg
tactatccttaccattatgctccgtttgctgctgatttcaaagacctcaccaagatggaa
attgctttcgaaaagggacggatttctaggccatttgaacagctgatgagcgtcttgccg
gcggcatctcgccatgctctccccacagtctttcatgacctgatgttacaaaaagatagt
gagattatcgacttctatccagaggagtttcaagtcgacttgaacgggaagaagatggca
tggcagggagtcgctctgcttccatttattgacatgccacgactcctcaaggctgttcaa
ggcaaatatgacttactgagcccagaagatgttgcacgaaacacagtgggaaaagacgtc
ttgctattgtctgatagccatgatggactctacgacgatatcctaaccaatttctactca
aagaagcaggaccgtttaagactcagcataaataccaaaaacagcaacggcttagcagga
gaaatagaaaagcaagaggataaggttccccatggggctttgaactatcccctggagcga
cgatctatgccggatctagattacgatcactcaattaggtatgatcaaactattcttttt
ttttttttgcctctggtactttttgactaa
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