Trichoderma atroviride: 25779999
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Entry
25779999 CDS
T10217
Symbol
TrAtP1_000347
Name
(RefSeq) uncharacterized protein
KO
K10754
replication factor C subunit 1
Organism
tatv Trichoderma atroviride
Pathway
tatv03030
DNA replication
tatv03410
Base excision repair
tatv03420
Nucleotide excision repair
tatv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
25779999 (TrAtP1_000347)
03410 Base excision repair
25779999 (TrAtP1_000347)
03420 Nucleotide excision repair
25779999 (TrAtP1_000347)
03430 Mismatch repair
25779999 (TrAtP1_000347)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tatv03032
]
25779999 (TrAtP1_000347)
03400 DNA repair and recombination proteins [BR:
tatv03400
]
25779999 (TrAtP1_000347)
DNA replication proteins [BR:
tatv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
25779999 (TrAtP1_000347)
DNA repair and recombination proteins [BR:
tatv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
25779999 (TrAtP1_000347)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
Rad17
AAA_22
nSTAND3
AAA_16
AAA_18
AAA_14
AAA_5
AAA_33
RuvB_N
BRCT_2
NTPase_1
AAA_28
RCF1-5-like_lid
Motif
Other DBs
NCBI-GeneID:
25779999
NCBI-ProteinID:
XP_065966611
LinkDB
All DBs
Position
1:complement(join(883785..884103,884174..886536))
Genome browser
AA seq
893 aa
AA seq
DB search
MEDGDEDADDIFAADAKGRKKGGNDEYETEESEDEVLPKSKARGRAAASGKNSADNSTSK
AAPAGKKRKSPEQESDEEEEEKLPRKKPAASKPRAPRAKKAEEPEDEDIQNILNSVATVR
APTPPPKDPNVKFDWRKAAASGGNASTQPAQPAGELPEGEEECLSGLTFVFTGVLQTIGR
DEGQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKANGIKTIDEHGLFDLIRKLP
AYGGTGKGAQKAQEKKKAEEEKVKQQIAEMEAEEKAKKREAEQAAKKKAAAQGSTSSAAA
QPVRAPDLLLTSKYAPTQLNQICGNKAQVEKIQNWLRNWPKSKKYNFQRRGADGMGGERA
IIISGPPGIGKTTAAHLAAKLEGYDVLESNASDTRSKKLVETGVSDVMNNTSLLGFFAGD
GKSVDNAKKKIVLIMDEVDGMSAGDRGGVGALAKFCKKTEVPLILICNERRLPKMKPFDH
AAFDIRFNRPTVDQVRSRIMTICHREGLKLPPPVVDALIEGSNKDIRQIINMISTAKLDQ
SSMSFDQSKAMSKAWEKHVVLKPWDICQKMLGGGLFAPASKATLNDKIELYFNDHEFSFL
MIQENYLRTKPMAVGANGYTGREATLKALELFDQAAESISDGDLVDRMIHGPQQHWSLMP
THAIFSTVRPASFVAGQLIGSNFTSWLGNHSKAGKLGRYIREIHSHMRLKSSGDHTEVRQ
EYLPLMWSQTVDRLQKEGGEAVGEVIDLMDSYYLTREDFDAIQELGVGPMREEDVKIETK
TKAAFTRTYNSMNHPLPFIKASNVLAPKKLAKEAPDLEEAIEEADDAEVLEAPDAEEDDD
IDFKKDKYIKQPKAKKPSKKAAKAQTADDEDSEEAKPKGRSKGKPAAKGKAKK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggaagatggcgatgaggatgctgatgatatattcgctgctgacgccaagggccgcaaa
aagggtggaaatgacgaatatgaaacggaagaatccgaagacgaagttctcccaaaatcc
aaagcacgagggcgagctgctgcctctggaaagaattctgcagacaactcgacgtccaag
gccgcaccggccggaaagaagcgaaagtccccggagcaggaatcggacgaagaggaagaa
gaaaagctacctcggaaaaaacctgcagcgagcaaaccacgcgcacccagagcgaagaaa
gcagaagagcccgaggacgaggatatccagaacatcttaaatagtgtggctactgtaaga
gcgccgacaccaccacctaaagatcccaacgtgaaattcgattggagaaaggccgccgct
agtggcggtaatgcttctacacaacccgctcagcctgctggcgagcttccggaaggcgag
gaagagtgtctcagtggattgaccttcgtcttcaccggtgtgttgcaaactattggccgc
gatgaaggccaggcactggtgaagcgatatggcggcaaagttactgggcagcccagtagc
aaaaccagtttcgtcgttctcggagacgatgctggacccagcaagttagccaagatcaaa
gcaaatggtatcaagaccattgatgagcatggccttttcgatctgattcgcaagcttccg
gcatatggtggtaccggcaagggcgctcaaaaagcacaagagaagaagaaggcagaggaa
gaaaaggtgaagcaacagattgcggaaatggaggcggaagagaaagcaaagaagcgtgaa
gcagagcaagcagcaaagaagaaggccgcagctcaaggatcaacgagcagcgccgcggct
caacctgtacgagcacccgatttgcttctcacttccaaatatgcgccgacacagctcaac
caaatatgcggcaacaaggcgcaggtagaaaagattcaaaactggcttcgaaactggcca
aagtcgaaaaagtacaatttccagcggcgtggagcagatggtatgggaggcgagcgagct
atcattatatctggccctcctggtattggaaaaactacggcggcccatttggcggctaag
ctcgaaggctacgatgtcttggagagcaatgctagtgatacacgaagcaagaaactcgtc
gagaccggggttagcgatgtcatgaacaatacttctttgctaggattcttcgctggagat
ggcaaatccgtggataatgccaagaaaaagattgttctcatcatggatgaggttgatggc
atgtcggctggtgatcgcggaggggttggcgccctggccaaattctgcaagaagacggaa
gtgccgttgatcctgatctgcaacgaacgtagattgccaaagatgaagcccttcgaccat
gctgcgtttgatattagattcaaccgtccgacggtcgatcaagtgcgctcccgcatcatg
acaatctgccaccgagaaggcctcaaactgccaccgccagttgtcgacgctctcattgaa
ggaagcaacaaggatatccgccagatcattaacatgatttccacagcgaagcttgaccaa
tcatcgatgagctttgatcaaagcaaagccatgtctaaagcatgggaaaagcatgtcgtc
ctgaagccgtgggacatctgccagaagatgcttggcggtggactctttgcccctgcgagc
aaggcaaccctcaatgacaagattgaactctacttcaatgatcatgagtttagcttcttg
atgattcaggaaaattacctccgcaccaagcccatggccgtgggtgccaatggatacacc
ggtcgagaagccactttaaaggcacttgagctctttgaccaagctgcggagagtatcagt
gatggtgacctagtggaccgtatgatccacgggccacagcagcactggagtctgatgcct
acgcatgctattttcagcactgtaagacctgccagcttcgtcgctggccagctgattgga
tctaatttcacttcatggcttggaaaccacagcaaagctggaaagctgggtcgatatatt
cgagaaattcactctcacatgcgactaaagtcgtctggcgatcatactgaggttcgacaa
gagtatctacctctgatgtggtcccaaacagttgatcggctgcaaaaagaaggcggtgaa
gccgtaggagaggtgattgacctgatggatagctactatctcacccgagaggactttgac
gccattcaagagctgggagttggtcctatgagggaagaagatgtcaaaatcgaaaccaag
acaaaagctgcctttactcgaacatacaattccatgaaccacccactaccattcatcaaa
gctagcaatgtgctggcaccaaagaagctcgctaaggaggcgccagatttggaagaagcc
attgaagaagcagatgatgctgaggtgttggaggctccagatgccgaagaagatgacgac
atcgatttcaagaaggacaaatacatcaagcaaccaaaggccaagaagccatcaaagaag
gctgcgaaagcccagaccgcagatgacgaagacagcgaggaagccaagccaaaaggccgc
tccaagggcaagcctgctgcaaaaggaaaagcaaaaaaataa
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