Trichoderma atroviride: 25780249
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Entry
25780249 CDS
T10217
Symbol
TrAtP1_003264
Name
(RefSeq) uncharacterized protein
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
tatv Trichoderma atroviride
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25780249 (TrAtP1_003264)
Enzymes [BR:
tatv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25780249 (TrAtP1_003264)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
25780249 (TrAtP1_003264)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
PhoH
Motif
Other DBs
NCBI-GeneID:
25780249
NCBI-ProteinID:
XP_065967888
LinkDB
All DBs
Position
2:join(1561946..1562796,1562853..1563665,1563719..1565195)
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AA seq
1046 aa
AA seq
DB search
MKKIMPNYREMQLEYAAPYMDRRFDSQPDEKKRVLFEPDGWQRKVLDSIDANNSLLVIAP
TSAGKTFISFYAMKKILEESDEGVLVYVAPTKALVNQIAAEVGARFTKSYKNREGKSVWA
IYTRDYRIQNPTGCQILVTVPHMLQILLLAPTNAKGPNAWSRRIKRIIFDEVHCIGQDAD
GVVWEQLLLAAPCPVIALSATIGNPEPFREWLSQVQRSKGLKLDFIVHTARYSDLRKFMH
VPQEREPFQGLRHNQLLPVPGLDEGEDCCTSLKFIHPVAALTERARTALDDLSLEARDCL
HLWKSIKKVLSDEEIAKLGVPDPSTILPETITKSDVLRLETELKQALRRIIETPGSAFQD
IRSSLEPRWTNARALSSNIGVKRVDDLESLFNLAVDLYSQGALPALIFHYDTHGCELIMK
LMLMRLVGAEQEWKEKSPTWTQKLKDFEAWKKSESLRQKKKPVQRNKGDASDGSRVSKLE
QLREEASADISPWESFKPNDPLEQFNFADTKKMQMSEVVEMISSLRGQVAPWLLEALGRG
LGVHHASLNRQYRQTVEVMFRKGYLRLVAATGTLALGINMPCKTVIFHGDSVFLTAQNFR
QASGRAGRRGFDLLGNVVFSRIPRERVYEIMSARLPGLNGQFPISTTLILRLFSLLHGSG
NCDFAVNMVKSLLSQTRLYLGGPESEMSIKHHVRFSIEYLRRQDLLSATGIPINFASIIG
HLYFMENAVFAFHSLLSGGYFHALCSDIHVDRDRVLLEMMLVLSHLFVRVPVKRTKRMVE
IAKTSSSVIFLPPLPQNAETLLLQHNEETLSIFKRYVQSYVSHSLKGKRDRVLPFTQTAV
GQEEPVHWVSADSGASRMVRSPFVALSGSADDFKTIHDLCQTVRGDVFLEESAIPSIPIW
PHDTDVEFNAYLYDFYKHGSMAVLVRDNGIRRGDVWFHLKEFSRTLSTVISSLTILMDAN
EMASEEDFEDFESEAEMATADEGTSSDPNGESSSVETPPSSATLYSQDQDDYAATGAYQK
GSLLRVLHAFTILREEFDTKFRRLWA
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagatcatgccaaactatcgcgagatgcagctcgaatacgcggccccctatatg
gatcgaagattcgactctcagccagacgaaaagaaaagggtgctgtttgaacccgacggc
tggcagcgcaaggtcctcgattcaattgatgccaataacagtctccttgttattgcacca
acatctgcgggtaaaacgttcatatcgttctatgcgatgaaaaaaatacttgaagagagc
gacgagggggttctagtttacgttgcaccgaccaaagccctcgtgaaccagattgccgcc
gaagttggagctcgcttcaccaagtcttacaaaaatagagaaggaaaatctgtttgggcc
atatacactcgtgattacagaatccaaaacccaacaggatgtcaaatattggtgactgtc
ccgcatatgctccagatattgctattggcaccaacaaatgccaaagggcccaatgcctgg
tccagacgtatcaagagaatcatctttgatgaagttcattgtatcggtcaggatgccgac
ggcgttgtatgggaacagctgcttctagcggctccgtgtccagtgattgccctctcggca
acaattggaaatcctgagcccttccgggaatggctgtcgcaggtacagcggagtaagggc
ctgaagctcgacttcattgtgcatacggcgcgatattcggatctccgaaaatttatgcac
gtaccccaagagcgcgagccattccaggggcttcgtcacaatcaattgcttcctgttccc
ggactagacgaaggtgaagactgttgtaccagtctcaagtttattcatcctgtagcagct
ttgactgagagggctcgtacagcgctcgatgatctttctctggaggcgagagactgtctc
catctgtggaagagtataaagaaagtgctctcagatgaagaaatcgccaagcttggggtt
cccgacccctctaccattctccccgagacgataaccaagtcggacgtccttcggttggag
acggagctcaaacaagcacttcggcgcatcatagagacaccaggctcggcgtttcaggat
ataagaagctctctcgagccacgttggactaatgcaagggctttgtcttccaatattggc
gttaagcgcgttgacgatttggaaagcctcttcaatttggccgtcgatctgtatagccaa
ggtgctctacccgctctcatattccactatgatactcatggatgtgagcttattatgaag
ctgatgcttatgaggctagtcggggccgaacaggagtggaaggaaaagtcacctacgtgg
acccagaaattaaaagattttgaggcgtggaaaaaatccgaaagccttcgacagaagaag
aagccggtccagcgaaacaaaggcgacgccagcgatggctccagggtttccaagctagag
cagctgcgcgaggaggcaagcgccgacattagtccttgggagagcttcaagccaaatgat
ccgttggagcagttcaactttgcagacacgaagaagatgcaaatgtctgaggtggttgaa
atgatctcgtcgctgcgaggccaggttgcaccgtggctgctggaggctcttggacgcggc
cttggcgtgcaccatgccagtctgaaccgacagtatcgccaaacggtcgaggttatgttt
cgtaaagggtacttgaggctggttgctgcaactggcacgcttgctcttggtatcaacatg
ccttgcaagacagtcatcttccatggcgattctgtattcctcacggctcaaaacttcagg
caggcttcaggtcgtgccggtcgcagaggctttgatcttcttggcaatgtcgtgttcagc
agaataccacgagaacgcgtatatgaaatcatgtcggcgcggctcccgggcctcaatgga
cagtttcccatatctacaacgcttatcctccgattattttcattacttcacggatctggc
aattgcgatttcgcggtgaacatggtcaaatcattgctatctcagacacgtctatatctc
ggcggaccggaatcagagatgtcgatcaagcatcatgtccgattttccatcgaatacctt
cggagacaggatttgctttcggccactggcatccctatcaatttcgccagtataataggc
cacttatactttatggagaatgcagtgtttgcctttcactcgctcttgagtggtggttat
ttccatgcgctttgttcagacatacatgtagaccgcgatagagtgcttttggagatgatg
ttagtgttgtcacacctatttgttcgggtaccagtcaagcgcaccaaaaggatggttgag
attgctaaaacatcctcgtctgtcatatttctcccgccactgccgcagaacgctgaaact
ctgcttttacaacacaatgaagaaactctctctatattcaagagatatgtgcagtcgtat
gtcagccatagcctgaaaggcaagagggatcgagtgttgccgttcactcaaacagcagta
ggccaagaagagccggtccattgggtttcagccgattctggggcttccagaatggtcaga
tctccctttgttgccctgtctggaagtgcagatgacttcaagacaattcatgatttgtgc
cagactgttcgtggagatgtattcttggaagaatcagccatcccatcaatccccatctgg
ccacacgatacagacgtggagtttaacgcttacctgtatgacttttacaagcacggcagc
atggctgtcctggtgagggataacggtattcgacgtggagacgtgtggtttcacctcaaa
gaattctctcgcacgctgtctaccgtcattagcagtctcaccattttgatggatgctaat
gagatggcttcagaagaagactttgaagactttgagagtgaagcagaaatggccactgcg
gatgaaggcaccagctctgatcctaatggagagagcagcagtgttgagacgccaccgtct
tctgccactctgtatagccaggatcaagacgattatgcagcgactggggcatatcaaaag
ggcagtcttcttagagtactccacgcattcaccattttgagagaggagtttgacaccaaa
ttccgccgtttgtgggcgtaa
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