Trichoderma atroviride: 25781538
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Entry
25781538 CDS
T10217
Symbol
TrAtP1_003487
Name
(RefSeq) uncharacterized protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
tatv Trichoderma atroviride
Pathway
tatv03020
RNA polymerase
tatv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
25781538 (TrAtP1_003487)
09124 Replication and repair
03420 Nucleotide excision repair
25781538 (TrAtP1_003487)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tatv03021
]
25781538 (TrAtP1_003487)
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25781538 (TrAtP1_003487)
03400 DNA repair and recombination proteins [BR:
tatv03400
]
25781538 (TrAtP1_003487)
Transcription machinery [BR:
tatv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
25781538 (TrAtP1_003487)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25781538 (TrAtP1_003487)
DNA repair and recombination proteins [BR:
tatv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
25781538 (TrAtP1_003487)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
25781538
NCBI-ProteinID:
XP_013943428
UniProt:
G9NW77
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All DBs
Position
2:complement(join(2156152..2156167,2156228..2156397,2156461..2156541,2156594..2156842))
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AA seq
171 aa
AA seq
DB search
MFFLYNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTCAGSYYIISIMDTFDISEGRILP
SNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLRLFVSAHLIPSDIKWDP
NATPPQFTNNEDTVIEPGTHVRVKIIGTRTEVGEMWAIGSIKEDYLGCLQD
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcctctacaacatggagcggagggtcaccctccacccgtcctacttcggccgt
aacatgcacgaccttgtgaccagcaaactgctgaaagatgtcgaaggtacctgcgccggc
agctactacatcatctccatcatggacaccttcgacatttccgaaggccggatcttaccg
agcaatggtctcgcagagtttaccgttggataccgcgcggtcgtatggcggccattcaaa
ggagagacggttgatgccgttgtctactccatcaatccacagggtttcttcgcccaagct
ggtcccctcagactgtttgtgtctgctcatctgatacccagcgacatcaaatgggacccc
aatgcgacacccccacagtttactaacaacgaagacactgtcatcgaaccgggtacgcat
gtgcgtgtcaagattatcggtactcgaacagaagtcggcgaaatgtgggctatcgggagc
atcaaagaggattatcttggatgccttcaagattaa
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