Trichoderma atroviride: 25781838
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Entry
25781838 CDS
T10217
Symbol
TrAtP1_002001
Name
(RefSeq) uncharacterized protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25781838 (TrAtP1_002001)
09123 Folding, sorting and degradation
03018 RNA degradation
25781838 (TrAtP1_002001)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25781838 (TrAtP1_002001)
03041 Spliceosome [BR:
tatv03041
]
25781838 (TrAtP1_002001)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25781838 (TrAtP1_002001)
mRNA degradation factors
5'-3' decay
Lsm complex
25781838 (TrAtP1_002001)
Spliceosome [BR:
tatv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
25781838 (TrAtP1_002001)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
FoP_duplication
DUF6897
Motif
Other DBs
NCBI-GeneID:
25781838
NCBI-ProteinID:
XP_013941133
UniProt:
G9P3A5
LinkDB
All DBs
Position
1:join(5575214..5575430,5575508..5575579,5575706..5575836)
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AA seq
139 aa
AA seq
DB search
MSDRPFHRGGRGGGDRGGGGGGYRGGRGGGRGGAGGAGAGGAQAERPKKENILDLAKYMD
KAIIVKFNGGREVRGTLKGYDALMNLVLDEVQETLRDDQGNETTRSLGLVVVRGTLLVLI
SPADGSEEIPNPFGAAADE
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatagacctttccacagaggcggccgcggtggcggtgaccgaggaggcggcggc
ggcggttaccgaggcggacgaggaggaggccgcggtggtgctggcggtgctggagctggc
ggtgctcaggccgagaggcccaagaaggagaacatcctggacctggccaagtacatggac
aaggccatcatcgtcaagttcaacggcggtcgagaagtccgcggcacgctcaagggctat
gacgccctcatgaacctcgtcctcgatgaagtccaagaaaccctccgagatgaccagggc
aacgaaacaacgcgatcactgggtcttgtagtcgttcgggggacgcttctagtcctcatc
agcccagcggatggcagcgaagaaatcccaaacccttttggcgcagcggcagacgagtaa
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