Trichoderma atroviride: 25781883
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Entry
25781883 CDS
T10217
Symbol
TrAtP1_001796
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03013
Nucleocytoplasmic transport
tatv03015
mRNA surveillance pathway
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25781883 (TrAtP1_001796)
09122 Translation
03013 Nucleocytoplasmic transport
25781883 (TrAtP1_001796)
03015 mRNA surveillance pathway
25781883 (TrAtP1_001796)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25781883 (TrAtP1_001796)
03041 Spliceosome [BR:
tatv03041
]
25781883 (TrAtP1_001796)
Enzymes [BR:
tatv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25781883 (TrAtP1_001796)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
25781883 (TrAtP1_001796)
Spliceosome [BR:
tatv03041
]
Complex C
Other components
EJC/TREX
25781883 (TrAtP1_001796)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
25781883 (TrAtP1_001796)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
DUF6066
Motif
Other DBs
NCBI-GeneID:
25781883
NCBI-ProteinID:
XP_013941285
UniProt:
G9P3T0
LinkDB
All DBs
Position
1:complement(join(4992440..4992488,4992563..4992820,4992888..4993248,4993299..4993709,4994410..4994641))
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AA seq
436 aa
AA seq
DB search
MSHEEDLIDYSDEEIGAANDTAAATASNGKKGEAAASGAVDKKGSYVGIHSTGFRDFLLK
PELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGE
VSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKGKDTCPHIIVG
TPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATL
AENIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVI
IFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGI
DIERINLAINYDLPGDASSYLHRVGRAGRFGTKGLAISFVSTEGDQEVLKEIEKRFEVAL
PEFPKEGVDASTYMAS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaggatctcattgactactccgatgaggagattggcgccgccaacgac
accgccgccgctaccgcttccaacggaaagaagggagaggcagccgccagcggcgccgtc
gacaagaagggcagctacgtcggcattcactccactggattccgcgatttcctgctgaag
cccgagcttctgcgtgccattggagattgcggtttcgaacatccttcggaggtccaacaa
acatgtatcccccaggccctccttggtggagacatcatctgccaggccaagtctggtctg
ggaaagactgcagtctttgtcctagccacgcttcagcaagtcgagcccgttaatggcgag
gtctcggtggttgtcatgtgccacactcgtgagctggcctaccagatccgagatgaatac
aaccgattcagcaagtacatgcctgacatcaagaccggcgtcttctacggtggtaccccc
atcaagaacgacgtcgagactctcaagggcaaggacacttgccctcacatcatcgtcggc
acccccggtcgtctcaaggctctcgtccgcgacaaggctctccgcctcggcagcgttcgc
atctttgtccttgatgagtgtgacaagatgctcgaccagcccgatatgcgtaccgacgtg
caggatgtcttccgtgctaccccccagcagaagcaggttatgatgttctccgccacgctt
gccgaaaacatcaagcccatctgccgcaaattcatgcagaatcccactgagcactacgtc
gacgaagacaccaagctcactctccacggtctccagcagtactacatcaagctggaggag
cgcgagaagaacagaaagctgaacgagcttctcgacgaccttcagttcaaccaggtcatc
atcttcgtcaagagcactgtccgcgctaccgagctggacaagcttctccgcgagtgcaac
ttcccttccatcgctgtccactctggagttagccaggaggagcgtatccgccgctacaag
gagttcaaggagtttaagaagcgcatctgcgttgccaccgacgtctttggacgtggtatc
gacattgagcgaatcaacttggccatcaactacgacttgcccggcgatgccagctcctac
ctccaccgtgtgggacgtgccggtcgattcggtaccaagggtcttgccatttcctttgtg
agcaccgagggtgaccaggaggttctcaaggagatcgagaagcgattcgaagtcgctctt
cccgaattccccaaggagggtgtcgatgccagcacctacatggcgtcttag
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