Trichoderma atroviride: 25782274
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Entry
25782274 CDS
T10217
Symbol
TrAtP1_011719
Name
(RefSeq) uncharacterized protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03013
Nucleocytoplasmic transport
tatv03015
mRNA surveillance pathway
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25782274 (TrAtP1_011719)
09122 Translation
03013 Nucleocytoplasmic transport
25782274 (TrAtP1_011719)
03015 mRNA surveillance pathway
25782274 (TrAtP1_011719)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25782274 (TrAtP1_011719)
03041 Spliceosome [BR:
tatv03041
]
25782274 (TrAtP1_011719)
03009 Ribosome biogenesis [BR:
tatv03009
]
25782274 (TrAtP1_011719)
03012 Translation factors [BR:
tatv03012
]
25782274 (TrAtP1_011719)
Enzymes [BR:
tatv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25782274 (TrAtP1_011719)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
25782274 (TrAtP1_011719)
mRNA cycle factors
Stress granule specific factors
25782274 (TrAtP1_011719)
Spliceosome [BR:
tatv03041
]
Complex C
Other components
EJC/TREX
25782274 (TrAtP1_011719)
Ribosome biogenesis [BR:
tatv03009
]
Eukaryotic type
90S particles
Helicases
25782274 (TrAtP1_011719)
Translation factors [BR:
tatv03012
]
Eukaryotic type
Initiation factors
eIF-4
25782274 (TrAtP1_011719)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
TniB
COG4_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
25782274
NCBI-ProteinID:
XP_013940279
UniProt:
G9P4W8
LinkDB
All DBs
Position
6:complement(join(3310033..3310091,3310152..3311192,3311277..3311385))
Genome browser
AA seq
402 aa
AA seq
DB search
MAEGAGGIDRKADERMEFSTSKEVTVHPTFEAMSLKENLLRGIYAYGYESPSAVQSRAIV
QICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALG
DYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLILDEAD
ELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEG
LKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGD
MPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR
FGRKGVAINFVTTEDVRILRDIELYYSTQIDEMPMNVADLIA
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaggcgctggaggaattgaccgcaaggcggatgagaggatggagttttccacc
tccaaagaggtgacggtgcatccgacctttgaggcaatgtcgctgaaagagaacctcctt
cgcggcatttacgcttacggttacgaatcaccatccgccgttcagtcgcgagccattgtc
cagatctgcaaaggacgcgacaccatcgcacaggcccagtctggtaccggaaaaacggcc
accttctcgatcagcatgctgcaagttattgacacggccgtgcgcgagactcaggccctt
gttctgtcccccactcgagaattggctacccagatccagtcggttgtcatggctttgggc
gattacatgaatgtgcaatgccacgcttgtatcggaggcacaaatgttggagaggatatt
cgaaaattggattacggccagcacattgtatcaggcacaccaggacgagttgcggatatg
attcgacgacgccatctcagaacgaggcacatcaagatgctgattctggatgaagcagac
gagctcctcaacaagggattccgagagcagatctacgatgtctaccgttacctaccaccc
gcgacccaggtcgtggtcgtcagtgccaccctgccctacgatgtgctcgacatgaccacc
aaattcatgaccgatcccgtccgaattcttgtcaagcgtgacgaacttacgctcgaaggt
ttgaaacaatactttatcgctgtggagaaggaagactggaaattcgacacgttgtgcgat
ctttatgatacgctcactattacccaagccgtcatcttctgcaacactcgccggaaggtt
gactggctcacagacaagatgcgcgaggcgaattttactgttagctccatgcatggtgat
atgccgcaaaaggagcgtgatagcattatgcaagatttccgacagggtaacagccgagtg
ctcatttcgacagatgtttgggcacgtggcatcgacgttcagcaagtcagtctggtcatc
aactacgacttaccaagcaaccgagagaactacatccaccgaattggtcgtagcggacga
tttggtcgcaagggtgttgccatcaactttgtgactacagaggacgttcgcatcctccga
gacattgagttgtactactcaactcaaattgacgagatgccgatgaacgtcgcagatctc
atcgcgtaa
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