Trichoderma atroviride: 25782628
Help
Entry
25782628 CDS
T10217
Symbol
TrAtP1_000746
Name
(RefSeq) uncharacterized protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25782628 (TrAtP1_000746)
09123 Folding, sorting and degradation
03018 RNA degradation
25782628 (TrAtP1_000746)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25782628 (TrAtP1_000746)
03041 Spliceosome [BR:
tatv03041
]
25782628 (TrAtP1_000746)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25782628 (TrAtP1_000746)
mRNA degradation factors
5'-3' decay
Lsm complex
25782628 (TrAtP1_000746)
Spliceosome [BR:
tatv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
25782628 (TrAtP1_000746)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
25782628
NCBI-ProteinID:
XP_013946220
UniProt:
G9NMA0
LinkDB
All DBs
Position
1:complement(join(1981488..1981682,1981786..1981862,1981938..1981965))
Genome browser
AA seq
99 aa
AA seq
DB search
MATLGGYLNKKVLIVTADSRILVGELAACDASTNLVLKNALERIIRTPDDPDPSAEVPLG
LYLVRGDNVCSIGLVDETLDESIDWTQVKGAVIGGIKHV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggccactctgggaggctacctcaacaaaaaggtcctgatcgtgacggcagactcgcga
atccttgttggggagctggcagcatgtgatgcgtcgacaaatctggttctgaaaaacgcc
ttggagaggattatccgaacacctgacgatccggatccatcagccgaggtccctctgggg
ttgtatctcgtacgaggcgacaacgtttgctcaattggccttgtcgacgaaacgctagac
gagagcatagactggacacaagtaaagggggcggtaataggaggaattaaacacgtttag
DBGET
integrated database retrieval system
