Trichoderma atroviride: 25784377
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Entry
25784377 CDS
T10217
Symbol
TrAtP1_012771
Name
(RefSeq) uncharacterized protein
KO
K10609
cullin 4
Organism
tatv Trichoderma atroviride
Pathway
tatv03420
Nucleotide excision repair
tatv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
25784377 (TrAtP1_012771)
09124 Replication and repair
03420 Nucleotide excision repair
25784377 (TrAtP1_012771)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tatv04121
]
25784377 (TrAtP1_012771)
03400 DNA repair and recombination proteins [BR:
tatv03400
]
25784377 (TrAtP1_012771)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tatv04147
]
25784377 (TrAtP1_012771)
Ubiquitin system [BR:
tatv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
25784377 (TrAtP1_012771)
DNA repair and recombination proteins [BR:
tatv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
25784377 (TrAtP1_012771)
TCR (transcription coupled repair) factors
Cul4-CSA complex
25784377 (TrAtP1_012771)
Exosome [BR:
tatv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
25784377 (TrAtP1_012771)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
PSD13_N
Motif
Other DBs
NCBI-GeneID:
25784377
NCBI-ProteinID:
XP_013943824
UniProt:
G9NUJ9
LinkDB
All DBs
Position
7:complement(join(2294107..2294164,2294225..2296134,2296213..2296755))
Genome browser
AA seq
836 aa
AA seq
DB search
MQPATVDPPSTSRRRPRVSSSTSPTSSPSAAKRPRFSDSLAMASVSARVKMPDIVDLTKR
QSAYQPLSGARKLVIKNVRSPVHHEARIKEYYARTERELDGALDAIFNSRTPAIPLERLY
RGVEDMCRKGNADTVYRTLKDKVDGHLKNVVLPKIQSAARISSLDVLRSTLAEWKTWNAQ
TILVRSTFSYLDRTYLLLKSLPSINDMAITRFCRMAFSSQNAEPSPNIGAFLISAICELI
NFDRRGDNRKDSELLKDSIMMLYVLGVYTKHFEPVYLQQSEAYFREFGETCSPLSLKEYI
EACERLLEREDYRCMAYNLDSTTERQSMSLAHIILIDKYSDKLLHGGSLSNLLTDRDVKS
LKGLYDLLRLSGIQKKLKTPWSDYIRETGASIVSDKNRGDEMVIRLLDLRRALDLTIRDA
FSKDEDFLWGMRESFGKFMNDRKIADCWSSGTSKIGEMTAKHIDMLLRGGIRALPKELLS
DVKDRAAAEKAGHASSADEDAELDRQLDQALELFRFIEGKDAFEAFYKKDLARRLLMGRS
ASQDAERNMLTKLRGECGSNFTHNLEQMFKDQELAKDEMEAYKEWCEGNPDRIGKVDLQV
MILSAAAWPTYPDVRLNLPDEVAKRTEQFERHYKNKHTGRVLTWKHSLAHCSVKATFPKG
AKELLVSAFQAAVLLLFNDVAADGFLAYEQISAATGLQGGDLDRTLQSLACGKARVLTKH
PKGRDVNPTDTFTFNKAFTDPKYRVKINQIQLKETKEENKATHEKIAQDRRFETQAAIVR
IMKSRKTMGHAELVAEVINLTKSRGSVEPAAIKKEIESLIEKDYLEREENSYTYLA
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccagcgacagtcgacccgccttctacctctcgccgccgccctcgcgtgtcctcg
tccacgtcgcccacgtcgtcgccctcagcagctaagaggcctaggttctccgacagcttg
gccatggctagcgtctcggcgagggtcaagatgcccgacattgttgacctgacgaagcgt
caatcggcgtaccagccgctgagtggagcgcggaagctggtcatcaagaacgtgcgcagt
cccgtccaccatgaagcccggatcaaggagtactatgcgcggacggagcgggaactggac
ggagcactggacgcaatcttcaacagccggactccggccattccgcttgagcgtctctac
cgcggcgtcgaagacatgtgccgaaagggaaacgccgatacagtgtacaggacgctcaag
gacaaggtggatggccatctgaagaatgtggttctccccaagatacagagcgcggccagg
atatccagtcttgatgttctgaggagcacgctagcggaatggaagacgtggaatgctcag
acgatcctcgtcagatcgacttttagctatctggaccgcacatatctgcttctcaagtct
ttgccatccataaacgacatggctattacgagattctgccgaatggccttttcatcgcaa
aatgcagagcctagcccaaacattggtgcctttcttatttccgcaatatgcgagttgatc
aactttgatcgccggggagacaatcggaaagattccgagctgctcaaagattctatcatg
atgctctatgtgttgggagtatacacaaaacatttcgagcccgtatacctacagcaatcc
gaagcatattttagagaatttggagaaacttgcagcccactgagcctcaaagagtacatc
gaagcctgtgagcgactcctggagcgtgaggattaccgatgcatggcgtacaacttggac
agtacaacagagaggcagtcaatgtcattggcgcatatcatcctcattgataaatactcg
gataagctccttcatggaggaagtctgtcaaatctgttaactgatcgagatgtaaagtct
ctgaagggattatatgaccttctccggctatcaggaatacaaaagaagctcaagacaccg
tggagcgactatattcgcgaaacgggggcttcaatagtgtccgacaagaacagaggcgac
gagatggtgattcgcctcttggatctccggcgagcgctggacctgaccattcgcgatgca
ttcagcaaagacgaagatttcctctggggaatgcgcgagtcatttggcaagttcatgaat
gaccggaagattgccgattgctggtcttcaggcacatcgaagatcggtgagatgacggcg
aagcacatcgatatgctacttcgtggtggcataagagcacttcccaaggagcttctgtcc
gacgtcaaagatcgagctgcggcagagaaagcaggacatgccagcagcgcagatgaggac
gctgaattggacaggcagctggatcaagctctcgaacttttccgattcatcgagggcaag
gacgcctttgaggccttttacaagaaagacttggctcgtcgccttctcatgggtcgcagt
gctagtcaagatgctgaacggaatatgctcaccaagttgcggggagagtgtggctccaac
ttcacccacaacctggagcagatgttcaaagaccaagagctcgccaaagatgagatggag
gcttacaaggagtggtgcgagggcaaccctgaccgcattggcaaagtggatctgcaagtg
atgatcctttcagctgctgcatggccgacatatcccgacgttaggctgaatctgcctgat
gaggtggccaaacgcaccgagcagttcgaaagacattacaaaaacaagcacacaggccga
gtattgacatggaagcactcgctcgcgcactgttctgtcaaggcaaccttccctaagggg
gcaaaggagctcttggtgtccgcattccaggctgctgtgcttttgctcttcaacgatgtc
gctgcagatggattcttggcgtatgagcaaatctcggcggccaccggcctccagggaggc
gatttggatcgaacactccagtcactagcctgcggaaaggcgcgtgttctgacaaagcat
ccaaagggccgtgatgtgaatcccacagacacatttacttttaacaaggcctttaccgac
cccaagtatcgtgtcaagatcaaccagattcagttaaaggagaccaaggaagaaaacaaa
gccacacacgaaaagattgcccaagataggcgcttcgagacccaagcagcgattgtgcgc
atcatgaagagccgcaagacaatgggccacgctgaactggtggccgaagtcatcaatttg
accaagtcgagaggcagtgtggagccagccgctattaagaaggagattgagagtttaatt
gagaaggattatcttgagagagaggaaaactcttacacttacttggcataa
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