Trichoderma atroviride: 25784842
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Entry
25784842 CDS
T10217
Symbol
TrAtP1_006995
Name
(RefSeq) uncharacterized protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25784842 (TrAtP1_006995)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25784842 (TrAtP1_006995)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25784842 (TrAtP1_006995)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
25784842 (TrAtP1_006995)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
WKF
DUF7310
Nnf1
ZNF380_CC
Mu-like_Pro
Motif
Other DBs
NCBI-GeneID:
25784842
NCBI-ProteinID:
XP_065969433
LinkDB
All DBs
Position
3:complement(join(5071971..5072031,5072102..5072615,5072694..5073783,5073868..5074122))
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AA seq
639 aa
AA seq
DB search
MAARKLQQEVDKCFKKVAEGVAEFEAIYEKIEQSNNPAQKEKQEDNLKREIKKLQRLRDQ
IKTWAASNDIKDKAPLLEHRKLIETQMEKFKAVEKAMKTKAYSQAGLSAAAKLDPKEQAK
VEACDFLNSMVDELELQIETLEAENESIQATMKKGKNKIVQENRMAEIDRIIEKHKWHQG
KLELIRRTLENGGIDTDEVTLLEEQIRYYVSDGMNEDYMDDDEIYDDLDLEEEEGVFGMN
QDNEKNSSQDTQSIQDDTHDLELPVKPRKPTKDSDSTTSTRTKSAQSKSPLPALATLHTP
LSAIGTGGSGSPAMKPASIPTRPAGEGLKYASAAAAAAAADKNNVGIAPLPPPPGIAAGI
SPLPPAQLKTSATNSPAVSFVQPAQAPEPKQATPIVAPASTSTPAPAPPAPAPVENAEPT
PSTKAAKKSKASGKQPTVSEVPPSEPPAAAPANGSTNGVKSATEETEEESIYHLPASLQD
LVESYETSRKRPYQPLSPSTLSLMKASQLSYPSAFEADVPRTYRPDMPVPQTGSGFPTQP
LPIFDDPRLYSRIDPDTLFYVFYYKQGTAQQYLAAKALKDQSWRFHKQYQTWFQRHEEPK
NITEEFEQGTYRFFDYESTWMNRRKADFKFAYKFLEDDI
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaggaaactacaacaagaagtcgacaagtgcttcaagaaggtggcggaaggc
gtcgccgagttcgaggccatctacgaaaagattgagcagtcaaataacccggcccaaaag
gagaagcaggaagacaacctcaagcgcgagatcaagaagctgcaaagactgcgcgaccag
atcaagacatgggccgccagcaacgacatcaaggacaaggctcccttattggagcatcgc
aaactgattgagactcaaatggaaaagttcaaggccgtggaaaaggccatgaagacgaaa
gcatactcccaagctggcctctcagccgcagcgaaactagatcccaaagagcaggccaaa
gtcgaggcctgtgactttttgaatagtatggttgacgagctagagctgcagatcgagacc
ctagaagccgaaaacgagtctatacaagctacgatgaagaaggggaagaacaagatcgtc
caggagaaccgcatggctgagatcgaccggataatcgaaaagcacaagtggcatcagggc
aaattggagctgattcgaaggacgctcgagaatggaggcatcgataccgacgaagtcacc
ctcctagaggaacaaatccgctactacgtgtctgatggcatgaacgaggactacatggac
gacgatgaaatatacgacgacctagacctcgaggaggaagaaggcgtctttggcatgaac
caggataacgagaagaactcatctcaggatacccagtccatacaagacgacacccatgat
ctcgaactgccagtcaaaccaaggaaacccaccaaagattccgactccaccacgtcaacg
cgaacgaaatccgcgcagtccaaatcacccttaccggcgctggcaacgctgcatactccg
ctatcggcaataggtaccgggggtagcggtagccctgccatgaagcctgcttctattcct
acgaggccggcgggagagggactcaagtatgcgtctgccgcggccgcagccgcagccgca
gacaagaacaacgtcggcattgctcctctgccgccgccaccaggaattgctgccggcatc
tcgccattaccgcccgcgcagctcaagacgagcgcaacgaattccccggctgtctcattt
gttcagccagctcaggcacccgaacccaagcaagctacaccaattgtcgcacccgcatct
acttctacgcctgcgcccgcgccacctgcacctgcacctgtagagaacgccgagccgacg
ccaagtacgaaagcggcaaagaaatctaaagcatcagggaaacagccgacagtatccgaa
gtaccgccgtctgagccaccagctgcagccccagcgaatgggtccaccaatggtgtcaag
tctgccacggaagagactgaagaggagtccatctaccacctccctgcgtctttacaggat
ctcgttgagtcgtatgagacatcacgaaaacgcccgtatcagccattatcaccttcaacc
ctgagcttgatgaaggcgagccagctgagctaccctagcgcctttgaagccgacgtcccg
cgaacataccgtcccgatatgcctgtgccgcagactggctctgggttccccacccagccg
ctgcccatattcgatgacccccggctgtactcgaggatagatcccgacactctgttttac
gttttttactacaagcaaggaaccgcgcagcagtatttggctgccaaggcactgaaagat
caaagctggcggttccataagcagtaccaaacgtggttccagcggcacgaagagcctaag
aatattacagaggaattcgagcaaggcacctaccggttttttgactacgagagcacatgg
atgaaccgaagaaaggctgattttaaatttgcttacaaatttcttgaggatgacatttag
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