Trichoderma atroviride: 25785154
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Entry
25785154 CDS
T10217
Symbol
TrAtP1_009399
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25785154 (TrAtP1_009399)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25785154 (TrAtP1_009399)
03041 Spliceosome [BR:
tatv03041
]
25785154 (TrAtP1_009399)
03009 Ribosome biogenesis [BR:
tatv03009
]
25785154 (TrAtP1_009399)
03016 Transfer RNA biogenesis [BR:
tatv03016
]
25785154 (TrAtP1_009399)
Enzymes [BR:
tatv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25785154 (TrAtP1_009399)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
25785154 (TrAtP1_009399)
Spliceosome [BR:
tatv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
25785154 (TrAtP1_009399)
Complex C
U4/U6.U5 tri-SnRNP related factors
25785154 (TrAtP1_009399)
Ribosome biogenesis [BR:
tatv03009
]
Eukaryotic type
Pre-60S particles
Helicases
25785154 (TrAtP1_009399)
Transfer RNA biogenesis [BR:
tatv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
25785154 (TrAtP1_009399)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Helicase_dom4_arc
AAA_16
Motif
Other DBs
NCBI-GeneID:
25785154
NCBI-ProteinID:
XP_013946958
UniProt:
G9NLN7
LinkDB
All DBs
Position
5:complement(join(658729..658909,658980..662092))
Genome browser
AA seq
1097 aa
AA seq
DB search
MDDMFDVFDGKAEAPSDSEDERTPQKSRSRAQSKKRKADEAMNGSAGAVADAANDDADVG
MADAAEVSRDEESEGEEDSDAPDHQDKKRRKKTDEAGPVMTDNFQTAESREVAGASTFVS
QDASLVLSHNIQHQVALPPDLNYEYIPLSEHKSPEEPARTYPFKLDPFQSLSVASIERDE
SVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGD
VTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPD
KVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPAGGKGARMVVDEK
GYFNEENFNLVMAEVEEKKGSDPADFTAKMKGKGKNKKTNKGGADEGSDINKIIRMTIKR
NFNPVIVFNFSKREVENMAVKISNLNFNDDSEKAMVNKVFQSAIESLSEQDRELPQIQNL
LPLLQKGVGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKW
DGVNIRPITSSEYVQMAGRAGRRGLDARGVVIMMIDDKLEPDTAKQIVTGQQDRLNSAFY
LGYNMILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKDLMALQQEKDALTIPDEATVK
DYYTIRQQLNTYTKDMRAVIQHPNYCLPFLQPGRLVQIHNPKESVEKIGGGLDFGWGVIT
DQYPRRTPKLGEPDYPPQESHIIEVLLYLSKSSAEIIPGQPSGEMPPGLKPSTDDDGMFA
VVPCLLTCIKAISQIRIFMPKEGLKSDDDRKDSAKALSEVQRRFPDGVPVLDPLENMDIS
DESFKQLLRKIEVLESRLVTNPLHMSPMLPSLWDQYHVKVQILDKIKEKKKEIAKAHSIA
QLDELKSRKRVLRRLGFINDAEVVQLKARVACEISSTEGHELLLSELLFDRFFNEMTPET
IAAVLSCFVFDEKIETQALKEELQKPYREIQAKARLIAKVSQESKLDVNEDQYAQSLKWQ
LMETIYAWAQGRPFVEICKMANVYEGSFIRIFRRLEELLRQMAQAAKVMGNDDLTKKFEE
SLGKIRRDIVAAQSLYL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatgacatgtttgatgttttcgacggcaaggcggaggccccaagcgacagcgaagat
gagagaacgcctcagaagagccgcagcagagcccagagcaagaagcgaaaggccgacgaa
gcgatgaatggcagcgcgggtgcggtggcggatgcggcaaacgacgatgccgacgtcggt
atggctgatgccgccgaggtttctcgagacgaggagtccgagggcgaggaggactcagat
gcgcccgatcaccaggacaagaagcgacgcaagaagaccgatgaggctgggccggtcatg
accgacaacttccagacagcagagtcaagagaagtcgcgggcgcctcaacatttgtttca
caggatgcgtcgctcgttctgtcacacaatatccagcatcaggtggcgcttccgcccgat
ctcaactacgagtacattcctctttccgagcacaagtcgcccgaagagcccgcgcgaaca
tatcctttcaagctggatcccttccagagcttgtccgttgcatcgatcgagcgcgacgaa
agtgttttggtgtcggcacacaccagtgcgggaaagacggtggtggcagaatacgcggtc
gcacagtgtctcaagcgcaaccagagggtcatttacaccagtccgatcaaggccctgagt
aaccagaaatacagagactttgaggccattttcggagatgttggattgatgactggtgat
gttaccatcaaccccacggcaagttgcttggtcatgaccacggagattttgcgatccatg
ttgtatcgcggttccgagattatgcgcgaagttgcttgggttgtattcgacgaaatccac
tacatgcgagacaaaactcgaggtgtggtttgggaggagacaatcatcatgcttcccgac
aaggtccgatacgttttcctgtctgccaccattccaaacgccttccagtttgccgaatgg
attgccaagatccaccaccaggcctgccacgtcgtttacactgatttcagacctactcca
ctacaaaactatttctacccggctggaggaaaaggagccagaatggtggtggacgaaaag
ggctacttcaatgaggagaacttcaacctggttatggccgaagttgaagagaagaagggc
tctgaccctgccgatttcaccgccaagatgaaaggaaagggaaagaacaagaaaaccaac
aagggcggcgctgatgaaggctccgacatcaacaagattatccgaatgacgattaagagg
aattttaacccagtcattgtcttcaatttctccaaacgggaggttgaaaacatggcggtc
aagatttccaatctcaacttcaacgacgactctgaaaaggccatggtaaacaaggtcttc
cagagcgctattgagagcttgtcagaacaagaccgagagctgccgcagatccagaacctc
ctgccgttgttgcagaagggtgttggtgtccatcattctggtctgctgccaattctcaaa
gagacaatcgaaattctgttccaggagtctctgattaaagtgctatttgcgactgagacc
ttctctattggtctcaacatgcctgccaagacagttgtctttactcaggttacgaaatgg
gatggtgtcaatattcgaccaatcacctcatcggaatacgttcagatggccggacgtgct
ggtcgtcgtggtcttgatgcccgaggtgttgtcatcatgatgattgacgacaagcttgag
ccagacaccgctaagcagattgtcactggccagcaggatagactcaactctgcattctac
ctgggctacaacatgattcttaaccttctcagaattgaggctatttctcctgagttcatg
ctggagagatgtttccaccagttccagaacgcagccagcgtcccaagcctcgaaaaggat
ctgatggcactgcagcaggagaaggatgctctgacaataccagacgaagccaccgtcaag
gattactacacgatccgacaacagttaaacacatacacaaaggacatgcgggcagtcatt
caacacccgaactactgtctacctttcttacaacctggccgacttgtgcagattcacaat
cccaaggagtctgtagagaagattggtggtggactcgactttggctggggcgtcattact
gatcaatacccgcgacggactcccaagctcggtgagcctgattacccgccccaggagtcc
cacatcatcgaggtccttctctacctttccaagtcaagtgcggagattattcctggccag
ccatctggagaaatgccacccggccttaagccctccaccgacgatgatggcatgttcgca
gtcgtgccttgcctcctgacatgcattaaggcgatcagccagatccgaatctttatgcca
aaggaaggcctaaagtctgacgacgatcgcaaagactccgcaaaggctttgagcgaagtg
cagcgcagattcccagacggcgtgcctgtcttggatcccctggagaacatggatatctcg
gatgaatcttttaagcagcttctccgaaaaatcgaggttctcgagtccaggctcgtaact
aaccccctgcacatgtctcctatgcttccttcactgtgggatcagtaccacgtcaaggtt
cagatcctggacaagattaaggagaagaagaaggagattgccaaggcccatagcattgcg
cagctggacgaactcaaatccagaaaacgtgtgctgcgtcgtctcggattcattaacgat
gccgaggtcgttcagctgaaagcccgcgttgcctgcgagatttcttctaccgaaggccat
gagctgctcctgtccgagcttctctttgaccgattcttcaacgagatgactcctgagacc
attgccgctgttcttagctgcttcgtctttgacgagaagattgagacccaggcattgaag
gaggagctgcagaagccgtatcgcgaaatccaggccaaggctcgattgattgccaaggtt
agccaggagtctaagctggatgtcaatgaagaccaatatgcgcagagcttgaagtggcag
ctcatggagacgatttatgcgtgggcgcagggacgaccatttgttgagatttgcaaaatg
gcaaacgtctacgagggttcgtttattcgtattttccgccgtcttgaggagcttctgcga
cagatggctcaggccgccaaggttatgggcaatgacgacctgacgaagaagtttgaggag
agtctaggaaagattaggagagatatcgtggctgctcagagtttgtatctgtaa
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integrated database retrieval system
