Trichoderma atroviride: 90958970
Help
Entry
90958970 CDS
T10217
Symbol
TrAtP1_002222
Name
(RefSeq) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
Brite
Enzymes [BR:
tatv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
90958970 (TrAtP1_002222)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
90958970 (TrAtP1_002222)
mRNA degradation factors
3'-5' decay
Ski complex
90958970 (TrAtP1_002222)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
90958970
NCBI-ProteinID:
XP_065967439
LinkDB
All DBs
Position
1:6144673..6147009
Genome browser
AA seq
778 aa
AA seq
DB search
MAGIDALLISQDAQDFVPSSSSKKRRLQDPEELKRRLEDELLMPSSQFSVEWLDRLQQRW
DFETDYTSLFKIAPPQTRTLTRFLRHGLEGRVTGYKNVTVPISGATAKNSTSLLRKPANR
ADFVRGAAGFFPFAPGGLEGIEATAALEDQIHAGTAAVDDAAGGNKLEKVIQLGGEGGLL
QTAPGMPRGIDFSIKKADKDTDAAEAIKQELEEDPEEARDANAEAEDSSSPNGASGDSPE
DGEEDGDDIDDLLPVEFPSLEPHGILAASSAKRAGREWAHMVDIKHDMPNFRELVPDMAR
EWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKAL
SNQKFRDFRQEFDEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEV
HYVNDYERGVVWEEVIIMLPEHISLILLSATVPNTHEFASWVGRTKQRDIYVISTAKRPV
PLEHYLWAGKDIHKIVDSDKKFLENGWKDAHKATQSKDKAPAAGNAIATRGGSQGGNQRG
GRGGNQRGGPQQRGGRGGGGGGGGGGHQRGRGGPPRASHNPGHMGRAGNPGGRSSAAQDK
NLWVHLVQFLKKQTLLPACIFVFSKKRCEENADALSNQDFCTATEKSAIHMVIEKSIARL
KPEDRVLPQIIRLRELLSRGIAVHHGGLLPIVKELVEILFARTLVKVLFATETFAMGLNL
PTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDKVGSVIIVPPGGDDAPPRC
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggctggcatcgacgctcttctcatctctcaggatgcacaagacttcgtccccagctcc
agctccaagaagcggcgcctccaggaccccgaagagctaaagcgacgtctggaagatgag
ctgctgatgccctcttcccagttctctgtcgagtggctggatcgtcttcagcagagatgg
gactttgagacagattacacgtctctgttcaaaattgcaccgccacagacccgaactctg
acgaggtttttgcgtcacggactggaaggccgcgttactggatacaagaatgtgacggtt
cccatcagcggtgccactgcaaagaactcgaccagtcttctgcgtaaaccggctaacagg
gcggatttcgtcagaggtgctgctggattctttccctttgcccctggtggactggagggc
atcgaggcgacggcggctttggaggaccagatccatgctggaacagctgctgttgacgat
gctgctggtgggaacaagctggagaaggtgattcaacttggcggcgagggagggttactg
caaactgcccctggaatgcctcgtggcatcgatttcagcataaaaaaggcagacaaggac
acggacgctgctgaagcgatcaagcaggagctcgaagaggatccagaagaggcaagagat
gccaacgcagaggccgaggactcatcgtcacccaatggcgcgtctggtgattccccagag
gatggagaggaagatggagacgacatcgacgacctgctgcctgtggagtttccgtctctc
gaaccacatggcattctcgcagcttcgagtgccaaacgagctggtcgagagtgggcacac
atggtcgatatcaagcacgacatgcccaatttcagagagctcgttcccgacatggctcga
gaatggccctttgagctggatacattccaaaaggaagccgtgtaccacctcgaaaacggc
gactcggtctttgttgcagcacatacgtctgccggcaagactgtcgtagctgaatacgcc
attgcactggcggccaagcacatgaccaaggccatctacacatcgcccatcaaggctctc
agcaatcaaaagtttcgtgattttagacaagagtttgacgaggtcggcatcttgacgggt
gatgtgcagatcaaccccgaggccagctgtctcatcatgacgacggagattctgcgaagc
atgctgtaccgcggagcagacttgattcgcgacgtcgagtttgtcatttttgacgaggtc
cactacgtaaacgactatgaacgtggtgtcgtttgggaagaggtcatcatcatgctgcca
gagcacatttcgctcatcttgctttcagccactgtgcccaacacgcacgagttcgcctct
tgggttggtagaaccaagcagagagacatttacgtaatttccacggccaagagaccggtg
cccttggaacactacctatgggccggcaaggatattcacaagattgtggattcggacaag
aagtttctcgaaaacggctggaaagacgcacacaaggctacgcaaagcaaagacaaggca
cccgctgctggcaatgcgattgccaccaggggaggcagtcaaggaggcaatcaacgaggc
ggaagaggtggcaaccaacgaggcggtccacagcaacgaggaggcagaggcggcggcggt
ggtggtggtggtggtggccaccagagaggacgaggaggacctcctcgagccagccacaac
cctggacacatgggacgagccggaaaccctggtgggcgatcaagcgctgctcaagacaag
aacttgtgggttcatttggttcagttcttgaagaagcagacgctgctgccggcttgtatc
tttgtcttttccaagaagcgatgcgaggaaaatgcggatgctctgagcaaccaggatttc
tgcacggctactgaaaagagcgccatccacatggtgattgaaaaatcaattgctcgtctc
aagcccgaggaccgagtccttccgcagattatcagactgcgtgaactcctcagcaggggt
attgcggtgcatcacggtggcctgttgcccattgtcaaggagctggtggagattctcttc
gccaggaccctcgtcaaggtcttgtttgccaccgagacctttgccatgggactcaacctg
cctacgagaactgtggtgttttccggataccgcaagcacgatggccactcgttccgcaac
cttttgcctggcgaatacacccagatggctggtcgagctggtcgtcgaggtctggataaa
gtcggttcggtcattatcgtgccgcctggcggagacgacgcgcccccccgttgctga
DBGET
integrated database retrieval system