Tateyamaria rhodophyticola: ACERHN_06620
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Entry
ACERHN_06620 CDS
T11509
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
taty Tateyamaria rhodophyticola
Pathway
taty02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
taty00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACERHN_06620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taty03021
]
ACERHN_06620 (rpoD)
Transcription machinery [BR:
taty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACERHN_06620 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
FTCD_C
Lmo0850
DUF5098
Motif
Other DBs
NCBI-ProteinID:
XOL79239
LinkDB
All DBs
Position
complement(1030405..1032387)
Genome browser
AA seq
660 aa
AA seq
DB search
MAAKDTNEDAKTEDQDNAHSLDMSQAAVKKMIGEAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINIIEDEEAEEEEQKGSTEVTTTEGTRDLTLGATGQEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEEILLRDV
IDLEATFGNQMGEDGEVTEPVVQAAGTTEEKAEDTPELDADGNPIAKDDDDDEDEQANMS
LAAMEAALKPQVLETLDVIAGDYAQLSEMQDNRISATLNEDGSFSAGDEETYQKLRSEIV
ALVNDLHLHNNRIEALIDQLYGINRRIMQIDSSIVKLADQARINRKEFVDAYRGRELDPG
WLDEMGGRSGRGWQMFIERSAEKVEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELADKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaaagatacaaacgaagacgccaagaccgaagaccaggacaacgcccattcg
ctcgacatgagccaggccgccgtcaagaagatgatcggtgaggcccgcgaaaagggctat
atcacatatgatcaactgaacacggttttgccgccggatcaggtaagttccgaacagatc
gaagacgtgatgtcgatgctgtccgaaatgggcatcaacatcatcgaagatgaagaggcc
gaggaagaagagcaaaagggctcgaccgaggtgacaacgaccgaaggcacccgcgatctg
acgctgggcgccacgggtcaggaaaaactcgaccggaccgacgaccccgtgcggatgtat
ttgcgcgaaatggggtcggtcgagctgctgtcccgcgaaggtgagatcgcgattgccaag
cgcatcgaggcgggccgcaatacgatgattgcgggcctctgcgaaagcccgctgaccttc
caggcgatcacgatctggcgcgacgaacttctgagcgaagaaatcctgttgcgcgacgtg
atcgacctcgaggcgacgttcggtaatcagatgggcgaagacggcgaagtgaccgaaccg
gtcgtgcaggccgctggcacaaccgaagaaaaggccgaagacacccccgagctggatgcc
gacggcaatcccatcgccaaggatgatgacgacgacgaggatgaacaggccaacatgtcg
cttgccgcgatggaggccgcgctcaagccgcaagtgctcgagacgctcgacgtgatcgcg
ggcgattatgcgcagctgagcgaaatgcaggacaaccggatttccgcaacgctgaacgag
gacgggtcgttctccgcgggcgacgaggagacctatcagaagctgcggtccgagatcgtt
gcgctggtcaatgacctgcacctgcacaacaaccggatcgaggcgctgatcgaccagctt
tacggcatcaaccgccgcatcatgcagatcgacagctcgatcgtgaaactcgccgatcag
gcgcggatcaaccgcaaggaatttgtggacgcctaccgcggtcgcgagcttgatcccggc
tggcttgacgagatgggcgggcgctccggtcgcggctggcagatgttcatcgaacgctcc
gctgaaaaggtcgaagagctgcgcgccgacatggcgcaagtgggtcagtatgtgggtctc
gacatttcggaattccgccgcatcgtgcagcaagtccagaagggcgagaaggaggcccgg
caggccaagaaggaaatggtcgaggcgaacctgcgcctcgtgatttccatcgccaagaaa
tacacgaaccgtggcctgcaattcctcgacctgattcaggaggggaacattggcctcatg
aaggcggtcgacaagttcgaataccgccgcggttacaagttctcgacctacgccacatgg
tggatccgtcaggcaatcacccggtccatcgcggatcaggcgcgcacgatccgaattcct
gtgcacatgattgagacgatcaacaaactggttcgtacgggtcgtcagatgctgcacgag
atcggtcgcgagccgacaccggaagaactggccgacaagctgcagatgccgctggaaaag
gtccgcaaggtgatgaaaatcgccaaggagccgatcagcctcgagacgcccatcggcgac
gaggaagacagccagcttggcgatttcatcgaggacaagaatgccgtgctgccgctcgac
agtgccattcaggaaaacctcaaggaaaccaccacacgcgtcctcgcctcgctcaccccg
cgtgaagagcgcgtgctgcggatgcggtttggcatcggcatgaacaccgaccatacgctt
gaagaggtgggccagcagttcagcgtgacccgcgaacggatccgccagatcgaggcgaaa
gcgctgcggaagctcaagcacccgagccggagccgcaagctgcgcagcttcctcgatcaa
taa
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