Tolumonas auensis: Tola_1276
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Entry
Tola_1276 CDS
T00904
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tau
Tolumonas auensis
Brite
KEGG Orthology (KO) [BR:
tau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tau03019
]
Tola_1276
Enzymes [BR:
tau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Tola_1276
Messenger RNA biogenesis [BR:
tau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Tola_1276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
T2SSE
nSTAND3
NACHT
AAA_22
SLFN-g3_helicase
PhoH
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACQ92893
UniProt:
C4LE72
LinkDB
All DBs
Position
1402215..1406096
Genome browser
AA seq
1293 aa
AA seq
DB search
MSDAILRSLQSQLSECLPVDKIQLQRRLQGVQRLPANKQAAVLTIIGQELEKARGRALLR
QQNIPQLHYPDLPVTDKRHDIADAIRKHQVVIVAGETGSGKTTQLPKICIEAGRGLQGMI
GHTQPRRLAARTVAARIAEELHCELGSHVGYKVRFHDQVNESSYIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPQRFSRHFSNAP
VIEVSGRTYPVEVRYRPWQEEEDSDPLQGLFNAVDELCVEGLGDILIFMNGEREIRDTAD
ALRKRNLRDTEILPLYSRLSNAEQNRIFSPHAGRRIVLATNVAETSLTVPGIRYVIDPGT
ARISRYSYKTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSELDFLGRPEFTDPEI
LRTNLASVILQMLALGLGDMSRFPFVEAPDSRHIKDGLRLLEELGAISGSIEGKQSLRLT
PLGRQLARVPLDPRLARMVLAAPQFGCLEEILIITSALSIQDPRERPMDKQQASDEKHRR
FEDKDSDFQAFLNLWNYVQEQQDTLSQNQFRKQCQKEFLSYLRLREWQDIHYQVRQATRE
LSLTINQDAAPEQAIHSAILTGLLSHIGVKDGDKSEYIGARNARFMIFPGSGLFKKPPKW
SMVAELTETSRLYGRTAARIQPEWIEPLAQHLIKKNYSDPRWSKKAGAVLASEKVTLYGI
TLVADREVQYGTIDPVVSRELFIRRALVEGDFETRHRFFAENRKLLAEVEALEAKSRRRD
ILVDDETLYLFYDAHIPADVVSARHFDSWWMVASKETPELLNFEREMLLQGDASHINEHD
YPNQWTQGRLKFRLSYQFEPGEEADGVTVHIPLPLLNQVEPLGFDWLIPGMRHELLIALI
KSLPKQWRKNFVPAPNYADALLASISPEQGPLLDAVERQLKRMSGLTVPRECWDWNAIPD
HLKMTFRVIDDKRRKVAESKDLLLLKEQLREQVQQTLSQVADDDIEQEGLTLWSFGPLPQ
QYSQKRGGFEVKAYPALVDQKDSVAIQLFDSPAAQQSAMWAGQRRLVLLNVPSPIKYLQE
KLPNKAKLGLYFTPFGKVADLIDDCIACGCDQLMQQHGGLSWDSDTFQQQKELIRGELNE
AVVKIAAQVEQILTAAHGIRKQFKGKMTLELAFSHSDIQAQLERLIHKGFVTETGAARLP
DLLRYMKGIERRMEKIPVDANRDRMYMLKVQHAEQAYQQLLGKLPKGQAIPEEVRNIRWM
IEELRISYFAQVLGTPYAVSDKRVLQAIEAIKV
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgatgcaattcttcgttcgctgcaaagccagctgtctgaatgccttcccgttgat
aaaattcagttacaacgccgcttacaaggcgtgcagcgattaccggctaataaacaagcc
gctgttttaacgataatcgggcaggagcttgaaaaagcgcgcggacgggcactgttacgt
cagcaaaatattcctcaattgcattaccctgatctgccggtaaccgataaacggcatgat
atcgctgacgccatccgtaagcatcaggtggtgattgtcgcgggcgaaaccggttcgggt
aagacaacgcagttaccgaaaatctgtatcgaagccggacgtggtctgcaggggatgata
gggcatacgcaaccccggcgtctggcggcgcgaacggttgctgcacgtatcgcggaagaa
ttgcattgtgagctgggctctcatgtcggctacaaggttcgttttcatgatcaggtaaac
gaaagctcatatatcaaactgatgaccgacggtatcttgctggcggaaattcagaatgac
cggatgctgacgcaatatgacacgatcattatcgatgaagcgcatgagcgcagtctcaac
atcgattttatcctcggttatctgaagcaattactgcccaaacgtcctgatttaaaactg
atcattacctcagcgacgattgatccgcagcgtttttcccgccatttcagtaatgcgccg
gtcattgaagtctccgggcgtacctacccggtggaagtgcgctatcgtccgtggcaggaa
gaagaggacagcgatccgctgcaagggctgtttaatgccgtggatgagctgtgcgtcgaa
ggccttggcgacatcctgatctttatgaacggggagcgcgagatcagagataccgcagat
gcattgcggaaacggaatctgcgggataccgaaatcctgccactgtattcacgcctgtcg
aatgcggaacaaaaccggattttttccccgcacgccggacgacgtatcgttctggcaacc
aacgtggcggagacatcactgactgtacccggcatccgttatgtgatcgatccgggtacg
gcacgaatcagccgttattcgtacaaaaccaaagtacaacgcttgcctattgaaccagtc
tcccaggcgagtgccaatcagcgtaaaggtcgctgtggtcgtgtcgctgcgggtatctgt
attcgtctttattcagagctggattttttaggccggcctgaattcaccgatcctgagatt
ctgcgtactaatctggcatcggtcatattacagatgctggcattaggtctgggggatatg
agccgcttcccgtttgtcgaagcgccggatagccgccatatcaaagatggtctgcgtttg
ctggaggaattaggtgcaatcagtggctccattgaaggcaaacagtcattgcggctgacc
ccactggggcggcagctggctcgtgttccgctggacccgcgtttagctcggatggtgctg
gctgcgccacagtttggctgtctcgaagagatcctgatcattacctctgcattgagtatt
caggatccacgtgaacgcccgatggataaacagcaggcatcggatgaaaaacatcgccgg
tttgaggataaagactctgattttcaggcctttctcaatctgtggaactatgtgcaggaa
cagcaggatacactgagtcagaatcagttccgtaagcagtgccagaaggaatttctctct
tatttacgactgcgtgaatggcaggatattcattatcaggtgcgtcaggcgactcgtgag
ctgagcttgacgattaaccaggatgctgcgccagagcaggccattcatagcgccattctt
acaggattgctgagccatatcggggtaaaagacggcgataaatctgaatacattggtgcc
cggaacgcccgttttatgatttttcctggctctggtctgttcaaaaaaccgcccaaatgg
agcatggttgctgaacttaccgaaacgtcacgtttgtatggccgtaccgcagcccggatc
cagccggaatggatcgaaccgctggctcagcatctgatcaaaaagaattacagtgatccg
cgctggtccaaaaaagccggcgcggtgctggcttcagagaaagtcacgttgtatggcatt
acgctggtcgccgatcgcgaagttcagtatggcactattgaccctgtggtcagccgcgaa
ctttttattcgccgggcattggtggaaggtgactttgaaacccggcaccgtttcttcgct
gaaaaccgtaaattgctggcggaagtagaagcgcttgaagcaaaatcccgtcgccgcgat
attctggtggatgatgaaacactgtatctgttctacgatgcgcatattcctgctgatgtc
gtttctgcccgccattttgacagttggtggatggtcgcaagtaaagaaaccccggaactg
ctcaatttcgaacgtgaaatgctgttgcagggtgatgcgtctcatatcaatgaacatgac
tatccgaatcagtggacgcagggacggcttaaattccgtctttcttaccagtttgaaccc
ggcgaagaagcggatggtgtcaccgtacatattccgttgccattactgaatcaagttgaa
ccgttgggttttgactggctgatccccgggatgcggcatgaactgctgatcgcgctgatt
aagtcattaccgaagcagtggcgtaagaattttgtacctgcccctaactatgctgatgcg
ttgctggcatctatttcgccggagcaggggccactactggatgcagttgaacgtcagctg
aaacggatgagtggcctgaccgtgccgcgcgaatgctgggactggaatgcgatacccgat
cacctgaagatgaccttcagggtcattgatgataagcgtcggaaggttgcggaaagcaaa
gatctgctgttgctgaaagagcagctgcgcgaacaggtacaacaaaccttatctcaggtc
gcggatgatgacattgagcaggaagggctgacgctatggagttttggccctttgccacag
caatatagtcagaaacggggcgggtttgaggtaaaagcgtatccggcactggtcgatcag
aaggattctgttgcgattcagctgtttgattcaccggctgcacagcagtccgcgatgtgg
gctggtcaacgccggctggtgctgttaaacgtgccgtcaccaattaaatatctgcaggaa
aaactgccgaataaagcgaagctggggctttattttacaccgttcggtaaagtcgcggac
ttgatcgatgactgtatcgcctgtggttgtgatcaactgatgcagcagcatggcggattg
tcatgggatagtgatactttccagcagcaaaaagagctcatccgtggtgagcttaatgag
gctgtggtgaaaattgccgcgcaggtggagcagatcctgaccgcagcacatggtatccgc
aaacagttcaaaggcaagatgacgctggaactggcgttttcccattcagatattcaggca
caactagagcgcttgattcataaaggctttgtgactgaaacgggcgcggcccggttaccc
gatctgttgcgttatatgaaaggtatagagcgacggatggaaaagatcccggtcgatgca
aaccgtgatcgtatgtatatgctcaaagtgcagcatgccgaacaggcttatcagcagttg
ctggggaaattacccaaagggcaggcgataccggaagaggttcgcaatatccgctggatg
attgaagaactgcgtatctcttattttgcccaggttctggggacaccctatgcggtatcc
gataagcgggtattgcaggcgatagaagccatcaaagtgtaa
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