Tolumonas auensis: Tola_2241
Help
Entry
Tola_2241 CDS
T00904
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tau
Tolumonas auensis
Pathway
tau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tola_2241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tau03400
]
Tola_2241
Enzymes [BR:
tau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tola_2241
DNA repair and recombination proteins [BR:
tau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tola_2241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACQ93839
UniProt:
C4L8W9
LinkDB
All DBs
Position
2455711..2459163
Genome browser
AA seq
1150 aa
AA seq
DB search
MTNYFTFSLNAKANQRLTFGQLNGSSLSLAIAELVTTQNHPVVLVVNDTPTALYLEQEIS
FLLKENNIPVRLFPDWETLPYDTFSPHQDIISQRIETLYHLPRMKQGLLILPVATLMLRT
APAGFIDGYSLLVKPGDKLDLHNLRQRLEHAGYNAVEQVLEHGEYAARGSLLDLFPMGSS
QPYRIDFFDDEVDTIRAFDPDTQRSHDPVKEVRLLPAHEFPTDKHAIDGFRQRFRELFDA
SRAPDSVYQQVSKGLWPAGIEYYLPLFFEQTATLLDYLPSSSLILTVGDIQQASEQFWLD
VQQRYEDRRYDLSRPLLPPATLYLPVDQLFGILKERTQIHCQTLPAEEKAGRVNLPVNAL
PELTIEAKQQEPLEALQRFLSLFGGRILFSVESEGRREALLELLAPLQLKLPILNSFDEF
ASGTAQHAIIVSPLEHGFILPDAGIALVCENELFGQKVVQRRRRDKKSSTNSEAIVRNLA
ELTIGQPVVHLDHGVGRYLGLQTIDAGGIAAEYLTLEYAGADKLYVPVTSLHLISRYSGS
ENPPLHKLGGETWLKARKKAVEKIRDVAAELLDVYAKRAARPGLAFRHDKQAYSKFAAGF
PFEETPDQLNAINSVLGDMCQAKAMDRLVCGDVGFGKTEVAMRATFVAVHAGKQVAVLVP
TTLLAQQHYENFRDRFANWPVNIEVMSRFKSAKEQKAAMEALAEGKIDIIIGTHKLLSED
IRFKDLGLLVVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMALSGMRDLSVIA
TPPAKRLAIKTFVRQYDKAVVREAILRELKRGGQVYYLHNNVETIDQTAALLSELIPEAR
IAIAHGQMRERDLERVMTDFYHQRYNLLVCTTIIETGIDVPSANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKQMTKDAVKRLEAIESLEDLGAGFVLATHDLEIRGAGE
LLGDEQSGQIESIGFTLYMEMLEQAVNSLKEGKEPSLDQLLSDHTDIELRVPALLPDDYI
PDVNMRLSIYKRIASCNTQEEIDELKIELIDRFGLLPQSAQNLIQISRFRLLAKPLGLKR
IEIGDRGGFIDFSQETKINPVFIVGLIQSQPRLYRMDGPARLRFNLPSADAKTRFSLVEQ
ILTSFATNQL
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaccaattactttactttttctctgaacgcaaaagcgaatcagcgtcttaccttcgga
caattaaatggcagcagtctttctctggcgattgctgagctggtaacaacgcaaaatcac
ccggtagtgctggttgtgaatgacacaccaactgccttatatctggagcaggagatcagc
tttctgctcaaagagaacaacattccggtacggttgtttcctgactgggaaacattgcct
tacgataccttctcaccacatcaggatattatctctcagcgtatagaaaccctttatcat
cttcctaggatgaaacaaggtctgctgatcctgccggtagcgacactgatgctccggaca
gcacctgccggtttcattgacggttacagtctgctggtcaaacccggtgataaactcgat
ttacacaatctgcggcagcggcttgaacatgccggctacaatgccgtcgagcaggtactg
gagcatggggaatacgcagcccgaggctccctgctcgacctgttccctatgggctcatcg
cagccttaccgtattgatttctttgatgatgaagttgataccatccgtgcctttgatccg
gatactcagcgctcacatgatccagtcaaagaagttcgcctgttacccgctcacgaattc
cctaccgataaacatgcgatcgatggcttccgtcagcgtttccgtgaactgtttgacgcc
agtcgtgcacctgactcagtctaccagcaggtcagtaaaggattatggcctgcaggaatt
gaatactatctgccgctgttttttgagcagaccgctacactgctggactatctcccctct
tccagtctgattctgactgttggcgatattcagcaggccagtgaacaattctggctggat
gtgcagcaacgctatgaagatcgccgttatgacttaagccgtccgctgctaccacccgcg
acgctttatttgccggtggatcagctgtttggcattctgaaagaacggacacaaattcac
tgccagacattaccggcagaagaaaaagccgggcgggttaatttaccggtcaatgcgtta
ccagaattaacaatagaagcgaaacaacaggaaccactggaagcactgcaacgcttttta
agcctgttcggtggccggatattattctcggtggaatcagaaggccgccgcgaagcctta
cttgagctgctggctccactgcaactcaaattgccgatcctgaactcattcgatgagttc
gccagcggtactgctcagcatgccattattgttagtccgctggaacatggttttatcctg
ccggatgcgggtatcgcactggtctgtgaaaatgaactgtttgggcagaaagttgtacaa
cgccgtcggcgtgataaaaaatccagtaccaacagcgaagctatcgtacgaaatctggcc
gaattaacgattggtcaaccggtcgtccatcttgatcacggggttggccgttatctcggg
ctgcaaaccatagatgctggcggtattgccgctgaatatctgacactggaatatgccggc
gccgacaaactatatgtcccggtcacctctttgcatttgatcagccggtacagtggcagt
gaaaacccgcccctgcataaattaggcggtgaaacatggctgaaagcccggaaaaaagcc
gttgagaaaatccgggatgtcgcagcagaactgcttgatgtctatgccaaacgagcggcc
agaccggggcttgcattcaggcatgacaaacaggcctacagtaaatttgcagccggtttc
ccatttgaggaaacaccggatcagctgaatgccattaactcagtgctgggtgatatgtgt
caggctaaagccatggatcgcctggtttgtggcgacgtcggcttcggaaaaaccgaagtg
gccatgcgggcaacctttgttgccgtccatgccggtaagcaggttgccgtgctggtacct
accaccttgctggcacaacaacattacgaaaacttccgcgatcggtttgccaactggccg
gtcaatatcgaggtgatgagtcgtttcaaaagtgccaaagagcagaaagccgcgatggaa
gcactggcagaaggcaaaatcgatatcattatcggcacacataaactgctgtccgaggat
attcgtttcaaggatctcggtctactggtagtagatgaagaacaccgcttcggtgtccgt
cagaaagaaaaaatcaaagcattgcgggccgatgtggatattctgaccctgaccgcaaca
ccaattccgcgcacgctgaacatggcgttgtccggtatgcgcgacctgtcagtaatagca
acacctccggctaagcgactcgcaatcaaaacatttgtccgccagtacgataaagcggtt
gttcgcgaagctatcctgcgtgaactgaaacgtggtggtcaggtctactacctgcataac
aatgttgaaactattgaccagactgcggcactgctcagcgaattgatacctgaagcccgg
attgcgattgcccatggacaaatgcgcgaacgggatctggagcgggtcatgaccgatttt
tatcatcagcgttataacctgctggtttgcacaaccatcattgaaaccggcatcgacgta
cccagtgcgaataccatcatcatggatcgcgctgataatttaggtttggctcagttacat
cagctccggggccgtgtcggtcgatcacaccatcaggcttatgcctacttgttaacgccg
catcctaaacagatgaccaaagatgcggtaaaacgtctcgaagcaatcgagtcactggaa
gatctgggtgctggctttgtgctggcaacacacgatcttgagatccgtggcgcaggagaa
ctgctaggcgatgaacaaagcggacagatcgaatctatcggctttaccctctatatggaa
atgctggagcaggcagtcaattcattgaaggaaggcaaagaaccgtctctggatcagctg
ctttctgatcatacggatatcgaactacgggttccggccttactgccggatgactatatt
ccggacgtaaacatgcgtttgtccatctacaagcgcattgccagctgtaatacccaggaa
gagattgatgaattgaaaatcgagctgatcgaccgttttggtctgttacctcagtcagct
caaaatctgatccagatttcacgtttccgcttactggcgaaaccattaggtcttaaacgt
atcgaaattggtgatcgtggtggctttattgatttcagtcaggaaacaaagatcaatcca
gtgttcatcgttggcctgatacagagtcagccacgactgtaccgcatggatggtccggcc
cgtctgcgatttaatctgcccagcgctgatgccaaaacccgtttctcactggtcgagcaa
atactgacttcgtttgcaacgaatcagctttaa
DBGET
integrated database retrieval system
