| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
taut Thermodesulfovibrio autotrophicus
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:taut00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V4D30_00055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:taut03021]
V4D30_00055 (rpoC)
03400 DNA repair and recombination proteins [BR:taut03400]
V4D30_00055 (rpoC)
Enzymes [BR:taut01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V4D30_00055 (rpoC)
Transcription machinery [BR:taut03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V4D30_00055 (rpoC)
DNA repair and recombination proteins [BR:taut03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V4D30_00055 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
8407..12522
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| AA seq |
1371 aa
MTEDIYSLFQKPKNPRDFDAIRIKLASPEKIREWSYGEVKKPETINYRTFKPEPEGLFCA
KIFGPIKDWECLCGKYKRMKHKGVICDKCGVEVIQSKVRRERMGHIELAAPVAHIWFVRG
VPSKMGLLLDLSVRQLERVIYYEDYIVIDPGDTPLKEKDILTEEEYKKYVSQYGSKFKVG
MGAEAIRELLKKIDLDVLAKELKEKIETATSTGIKRKLTKRLKVVEAFKNSGNRPEWMVL
DIIPVLPPELRPLVPLDGGRFASSDLNDLYRRVINRNNRLKRLMELKAPSVIIRNEKRML
QEAVDTLFDNTKRSKALKAGTRRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELDMHQCGLPKTMALELFKPFVFNKLEEKGYATTIKQAKRLVEQEKPEVWDALEEVIQEH
PVLLNRAPTLHRLGIQAFDPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLSYEAQIE
ARVLMMSVGNLLSPANGKPIVVPTQDMVLGIYYLTKEKKDAKGAGKVFSDVQEVILAYQS
KVVEKHAPIKVKINGQLVETTVGRVLFREIVPEGVPFQMINKELTKKELGKLIEYIHYNF
GKRDTVLFLNKLEKLGFEIATQSGISICIDDMHIPSKKAELIKEAEAQVMEVQRQYAEGL
ITQGERYNKVIDIWANVTEKVADEMMKELGAEKGKELTPEELAERRSFNSIFMMADSGAR
GSIAQIRQLAGMRGLMAKPSGEIIETPITANFREGLTPLQYFISTHGARKGLADTALKTA
NAGYLTRRLVDVAQDIFLTENDCGTKEGIYITALIEGGEIVMPLEERIYGRTLAEDVKDP
LTGEIIAKRDTLIDQMVAKKIVDAGVDRVKIRSVLTCRTKFGVCSKCYGMDLARSEPVEI
GEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKIVEQAVLEAKTSGTVVFKNIHYVERKDG
SLVVLNRNAMIAITDTSGREREKYNLVYGAKIIVKEGQIVEAGQRLAEWDAYTTPIITEI
GGKIALGDMVEGVTFKEETDPTTGLSHKIIIDYPATYRPRVTIKDKDGKTARLPSGSPAR
YLLPAGAILVVDKGDVVEPGDILAKIPRETIKTKDITGGLPRVAELFEARRPREAAIVSE
IDGIVEFKGSQKGSRVIVVRGADETREYIIPKGKHVIVHDGDWVKAGEPLIDGSINPHSI
LEILGPTELQRYLVDEIQKVYRLQGVSIHDKHIEVIVRQMMKKVRIEDPGDTSFLIGDEV
DRFTFIEENEKVIAQGGRPAQARPLLLGITKAALSTESWVSAASFQETTRVLTDAAIEAR
IDELRGLKENVIMGRIIPAGTGSPVYKDTLIKGEFYTMQIEHSSEERLEEN |
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| NT seq |
4116 nt +upstreamnt +downstreamnt
ttgacagaagatatttattcactttttcaaaaacctaaaaatccaagagattttgatgcg
ataagaataaaacttgcttcacctgaaaaaataagggaatggtcttatggagaagtaaaa
aagcctgaaaccattaattacagaacatttaagccagaacctgaaggacttttctgtgct
aaaattttcggtcctataaaagactgggaatgtctttgcggcaaatacaaacgaatgaag
cataaaggcgttatatgtgataaatgcggagttgaagtaattcagagtaaggtcagacgc
gaaagaatgggtcacattgaacttgctgctcctgtggcacatatatggtttgtcagagga
gttccaagtaaaatgggactgttgcttgacctttctgtcagacagcttgaaagagttatt
tactatgaagactacattgttatagaccctggagatacgcctttaaaggaaaaagatatt
ctcactgaagaggaatacaaaaagtatgtttctcaatatggtagcaaatttaaagttgga
atgggagcagaggccattagagaacttcttaaaaagattgatcttgatgttcttgcaaag
gagcttaaagaaaagatagagactgccacctccacgggaattaagagaaaacttacaaaa
agactcaaggttgttgaagcttttaaaaattcgggtaatcgccctgaatggatggttctt
gatattattcctgtgcttcctccagagcttagaccactggtgcctcttgatggtggaaga
tttgcctcttcagatttaaatgatctctacaggagggttataaatagaaataacagatta
aaaagactgatggagcttaaagctcccagtgtaattatcagaaatgaaaagagaatgctt
caggaagcggttgatacactttttgacaacaccaagcgttcaaaagctctgaaagcaggc
acccgcagacctcttaaatccttaagtgacatgataaagggcaaacagggaaggttcaga
cagaaccttcttggtaaaagagttgattattccggtagatcagtaattgttgttggtcct
gaacttgatatgcatcaatgcggattacctaaaacaatggctcttgagctttttaagccc
tttgttttcaataaacttgaagaaaagggttatgcaacaacaataaaacaggcaaaaaga
cttgttgagcaggaaaagcctgaagtgtgggatgcccttgaagaggtgattcaggaacat
cctgtgcttttaaacagagctccaacacttcacaggctgggaattcaggcttttgaccct
gtgcttgtagaaggaaaggcaatcaagcttcatccacttgtatgtacagcctttaatgca
gattttgatggtgaccagatggctgttcatgttcctctgtcctatgaagctcaaattgag
gcaagagttctaatgatgtcagtgggaaatcttctctctcctgctaatggtaaacctatt
gttgtgccaacacaggatatggtattggggatttattatcttacaaaggaaaagaaggac
gcaaaaggtgcgggtaaagttttctccgacgtgcaagaagttattctcgcttatcagagc
aaggtagtggaaaagcacgctccaataaaagtcaaaataaatggacagcttgttgaaacc
accgtaggaagagttctttttagagagattgtgccagagggtgttcctttccaaatgatt
aataaggagttgacaaagaaggagcttggaaaactgattgaatatattcattataacttt
ggcaaaagggatacggttttatttttgaataagcttgaaaaattaggatttgagattgcc
actcagtcaggaatttctatatgcattgatgacatgcacatcccttcaaagaaagcagag
ttgattaaagaagcagaagctcaggtaatggaagttcagaggcagtatgctgaaggattg
attacgcagggtgagagatataacaaagttatagacatatgggcaaatgttacggagaaa
gttgctgatgagatgatgaaagagcttggagcagaaaagggcaaagagttaacaccagaa
gaacttgctgaaagaaggtcctttaacagcatcttcatgatggctgactcaggtgctcgt
ggcagcatagcacagataaggcagcttgctggtatgagaggacttatggcaaaaccttca
ggtgagattatagaaaccccaattacagccaatttcagagaaggacttactccgttacaa
tactttatctccacgcatggtgcaagaaaaggtctggcagatacagcactgaaaacagca
aatgctggttatctaacaagaaggcttgttgatgtggctcaggacatatttcttacagaa
aatgattgtggaacaaaagaaggaatatatatcactgccttgatagaaggtggtgaaata
gtaatgcctcttgaagaacgaatctatggtagaacgctggcagaagatgttaaggatcct
cttactggtgaaataattgcaaaaagggatactttaatagaccagatggttgcgaagaag
attgtagatgcaggagttgatagagtaaaaattcgctctgtgctcacatgcagaacaaaa
ttcggtgtttgttcaaaatgttatggaatggatctcgcaaggagtgaacctgttgaaata
ggtgaggcaattggagttattgctgctcagtctattggagagccaggtactcagcttaca
atgagaaccttccacataggtggagcagcaaccaaaatagttgagcaggctgtactggaa
gccaagacttcaggaacagttgtatttaaaaacattcattatgtagaaagaaaagatggc
tcactggttgttcttaacagaaatgccatgattgctatcacagacacctcaggaagagaa
agggaaaaatataatcttgtatacggtgctaaaattattgttaaggaaggacagattgta
gaggctgggcagagactggctgagtgggatgcctatacaacaccaattatcactgaaata
ggtggtaagatagctcttggtgatatggtagagggtgttacatttaaagaagagacagat
cctaccacaggtctttctcacaagataataattgattatccagcaacttacagacctcgt
gttactataaaggataaagatggaaaaacagctcgccttccttcaggatcgcctgcaagg
tatcttcttccagcaggagcaattttagtagttgacaaaggagatgtagtagagccagga
gatatacttgcaaaaattccaagagaaacaattaaaacgaaggatataacaggaggactg
ccaagagtagcagaactctttgaagcaagaagacccagagaagcagcaattgtaagtgag
atagatggcatagtggaattcaaaggaagtcagaaaggctcaagagttatagttgtcaga
ggagcagatgaaacaagagagtatattattccaaagggtaagcatgtaatagttcacgat
ggagactgggttaaagcaggcgagccattaattgatggatctattaatcctcacagtata
cttgaaattttgggtcccacagaacttcagagatatcttgtagatgagattcagaaagtt
tatagactccagggcgtttcaatacatgacaaacatattgaagtgattgtaaggcagatg
atgaaaaaggtaagaatagaggatccgggcgatacatcttttctcataggtgatgaggtt
gatagattcacattcattgaggaaaatgaaaaagttatagcccagggaggcagacctgct
caggcaagaccgcttttacttggaattacaaaagcagctctttcaacggaatcatgggta
tcagcagcttcattccaggaaaccaccagagttcttactgatgcagcaattgaagcaagg
attgatgagttgagaggattaaaagaaaatgtgataatgggaagaattattcctgctgga
acaggctctccggtgtataaagataccttgattaaaggtgagttttacactatgcagata
gaacactcaagtgaagaaaggcttgaagaaaactga |
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