Thermosulfuriphilus ammonigenes: G4V39_06385
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Entry
G4V39_06385 CDS
T06469
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tav
Thermosulfuriphilus ammonigenes
Pathway
tav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4V39_06385 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tav03019
]
G4V39_06385 (rnr)
03016 Transfer RNA biogenesis [BR:
tav03016
]
G4V39_06385 (rnr)
Enzymes [BR:
tav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G4V39_06385 (rnr)
Messenger RNA biogenesis [BR:
tav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G4V39_06385 (rnr)
Transfer RNA biogenesis [BR:
tav03016
]
Prokaryotic type
tRNA degradation factors
G4V39_06385 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
OB_RNR_1st
S1CSD-TOTE-2
Rho_RNA_bind
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QIJ71913
UniProt:
A0A6G7PWX4
LinkDB
All DBs
Position
complement(1315332..1317527)
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AA seq
731 aa
AA seq
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MGKKIKKKPSIPPTEKNIIKIMEERGRPLLLREIYHALHIPSEERKKVRELIQRLTSQGR
LVHLKGKRYGLPEKMRLVTGRLTVHRDGYGFVETGEKGQPDVFIPPGKLKGAVDGDRVVV
RIEKSGRRPEGSIIRILERGRRKIIGYFHRGRHVSTVIPEEENLFFEVFIPKGLGKGARS
GQIVVAELIDFRPERRNPEGRVIEVLGDPKDLSVQTKIVIHKYDLPHELSEAAKKELQQI
PDEVREEDKAGREDLTEIPLVTIDGETARDFDDAVYVAKRRQGWRLYVAIADVSHYVPQG
SALDEEAYRRGTSVYFPNAVVPMFPEKLSNNLCSLNPEVERLALAVIIDFDRQGRVKRSR
FTKAVIRSHHRFSYTEVKKILVDRDRDLRREHKPFLTSLKWMAELAMEIKAQREARGSID
FDLPEPQIILSFKGELEDIVRRERNLAHMIIEEFMIAANEAVARHLTEREYPILYRVHEA
PDLERVKEFVEFAASLGLDLKVPRRLSPAWFQQVLKEIEGKPYAYIVNTILLRTMKQASY
DPYNLGHFGLASECYCHFTSPIRRYPDLVVHRALKALLEGRKPPYRLEDLKKMGQHLSHR
ERVAMEAEREMIDRVRVRLMAERLGEEYEGVISGVAAFGFFVELFEVFVSGVVRLVDLSD
DYYILDEKHHRLVGTRTGRVFQIGDVVRVRVKAVDIARRHINFELIESRKENGKKSGRRR
KRRSKKKKANP
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaagatcaaaaagaagccctccattccccctacggaaaaaaacattatcaag
atcatggaagagcggggacggcccctgctgttacgagaaatctatcacgcccttcatatt
ccttctgaagagcggaaaaaggttcgggagcttatccagaggctcacctctcagggacgg
ctggttcacctcaagggtaagcgttatgggctaccagagaagatgcgtctggtcaccggc
cgtctcaccgttcatcgcgatggatacggctttgtggagacaggagaaaaaggccagccg
gatgtcttcatccctcccggaaagctcaaaggggccgtggacggagaccgggtagttgtc
cgaatcgaaaagtccggacgccgccccgagggttctattatccggatcctggagcgaggt
cgtcgaaagattatcggctattttcatcgtggccgacatgtctccaccgttattcccgaa
gaagaaaatctcttctttgaggtctttatccccaaggggctaggcaagggggcccggagc
ggccaaatagtggtagcggagctcatcgactttcgtccggagcggcgcaatcccgaaggt
cgggtaatagaagttctgggtgatcccaaagacctaagtgtccagaccaagatcgtcatt
cacaaatacgaccttccccatgaactctctgaggccgcaaagaaagagctgcagcagatt
ccagatgaagtccgggaggaagacaaggccggccgggaggacctcaccgagattccgttg
gtgaccatcgacggagagacagcccgagacttcgatgacgccgtttatgtggccaagcgc
cgtcagggctggcgcctctatgtcgccatcgccgatgtcagccactatgtcccccaagga
tcagccctggatgaagaggcctatagacgaggaaccagcgtttatttccccaacgcagtg
gttcccatgtttccagaaaaactctccaacaacctttgctccctaaacccggaggtggaa
cgactggccttggcggtcatcatcgattttgaccgacagggacgggttaagcgatcccgc
ttcaccaaagccgtcattagaagccatcaccggttcagctacacggaggtcaaaaagatt
ctggtagacagagatcgggatcttcgccgggagcacaagccctttctcacctctctcaag
tggatggccgagctggctatggagatcaaggcccagcgggaggcccgaggctccatcgac
tttgaccttcccgaacctcaaatcatcctcagcttcaaaggggagcttgaggatatcgtt
cgccgggagcgtaatctggcccatatgatcatcgaagaattcatgatcgccgccaacgaa
gccgtagcccggcatctcaccgaaagagagtatcccatactttatcgcgtccatgaggcc
ccagaccttgagagggtaaaagagtttgtggagtttgccgccagcctggggttggattta
aaggtcccccgaaggctttctccggcctggtttcagcaggtgttaaaagagatagaagga
aagccctatgcctatattgtcaatacgatccttttgcgcaccatgaagcaggccagttac
gatccttacaatctgggccacttcggcctggcctcagaatgctattgtcactttacctcc
cccattagacgctacccggatttggtcgtccaccgggccctaaaggccctccttgaaggg
cgaaagcccccctatcgcttagaagatcttaagaagatgggccagcatctttctcaccgg
gaacgggtggccatggaggccgaacgggagatgatcgaccgggtaagggttcggctgatg
gccgaacgtctgggtgaggaatatgaaggggtcatctccggagtggctgcctttggcttt
tttgttgagctctttgaggtctttgtctccggtgtggttcgcctggtggacctctccgat
gactattacatcctcgacgagaaacatcaccggctggtgggcacccgcacagggagagtt
tttcagatcggagacgtcgttcgagtgagagtcaaggcggtagatatagcccgccgacac
atcaattttgagctgatagaaagccgaaaagagaatggcaaaaaatccggcaggcgccgc
aagcgccgctccaaaaagaaaaaagctaatccatga
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