Thermosulfuriphilus ammonigenes: G4V39_06800
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Entry
G4V39_06800 CDS
T06469
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tav
Thermosulfuriphilus ammonigenes
Pathway
tav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G4V39_06800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tav03021
]
G4V39_06800 (rpoD)
Transcription machinery [BR:
tav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G4V39_06800 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
APC_rep
Sigma70_ner
Motif
Other DBs
NCBI-ProteinID:
QIJ71989
UniProt:
A0A6G7PWC5
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Position
complement(1398322..1400019)
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AA seq
565 aa
AA seq
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MADLTKINLEEIEGLLSPENASKIKVKIPEVASSGHLEEVADLFEDFEIPAESASSMGKI
DEGPDELLLDGTAGLSDPVRIYLREMGVISLLSREDEIRIAKMIEEGEHEALSAAFESPL
TMTELIRVRDELRERRLKLREVVRDTEDEDDGEQRTAKEEKVLQVLDKIAQYEPLCREAW
EGLSRAKDRNERRRLRYRLRRTREAILREIQEIRLDKRCIDRLTKPVLTLENRIRRALEE
IAHCRRQTGQSLRRLEEVFTQTNGDFRKIEEQASKMRLTTEEFLNLRARFLLARKDLEAI
RERAGLSPETLLQLAARIRAGLNKAKWGKDQLIKANLRLVVSIAKKYTSRGLQFLDLIQE
GNIGLMRAVEKFDYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRIS
RQFLQETGREPSAEELAELMELPVEKVRKVLKIAKEPISLETPIGDDEDSHLGDFIEDKR
VPSPDQVAISLNLIEQTRKVLATLTPREEKVLRMRFGIGERCEHTLEEVGRDFKVTRERI
RQIEAKALRKLRHPSRSRQLRSFVE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggcagatctcaccaaaataaaccttgaggagatcgagggactcctttccccggaaaat
gcctctaagatcaaagtaaagattccagaagtggcctccagtggccacctagaggaagtt
gccgacctgtttgaagactttgagatacccgctgaatctgccagcagtatggggaagatc
gacgaggggccagatgagcttcttctcgacgggacagccggtctctccgatccggtaagg
atttatctccgcgagatgggggtcatctcgctcctttcccgagaggatgaaattcgcatc
gccaagatgatcgaagagggcgagcatgaggccctttcggccgccttcgaatctccccta
accatgaccgaactgatccgggtccgcgatgaacttagggagcgccgtctcaaactgcgg
gaggtggttcgggacacggaggatgaagatgacggagagcaaagaacggccaaggaagaa
aaggtccttcaggtattagacaagattgcccagtatgaacccctctgtagagaggcctgg
gagggtctctcccgggccaaagatcggaacgagagaaggcgccttcgctatcgtctccga
cgcaccagagaggctatcctgcgcgagattcaggagatccgtttagataaacgatgtatt
gatcgcttgaccaaaccggttctcacccttgagaatcgtatacgacgggcattggaggag
atcgcccactgccggcgtcagacaggtcaatccttaagacgtctggaagaggtcttcact
caaaccaatggagattttcgcaaaatagaagagcaggctagcaagatgcggcttaccacc
gaggagttccttaaccttagggcccgcttccttctggcccgcaaggatcttgaggccata
cgggaacgggccggtctgtctccagaaactctcctccaattggccgccagaataagagcc
ggtctaaacaaggccaaatggggcaaggatcagctcatcaaggccaatcttcggctagtg
gtctccattgctaaaaaatacaccagtcgagggctccagtttttagatctcattcaggaa
ggcaatatcggccttatgcgggcggtagagaagtttgattatcgtcggggatacaagttc
agcacttatgccacctggtggatccgtcaggccatcacccgggccattgccgatcaggcc
cgaactattcgcattcccgtccacatgattgagaccatcaacaaattggtgcgtatctcc
aggcagttccttcaagaaaccggccgcgagccctcagctgaagagctggccgaactcatg
gagctccccgtagagaaggtacgcaaagtcctcaaaatcgccaaagaaccgatttcctta
gagactcccatcggtgacgacgaagacagccatctgggagattttattgaagataaaagg
gttccttctccagaccaggtggccattagtctcaatctgattgagcagactcgcaaggtt
ttagccacccttaccccccgggaggaaaaggtcctgaggatgcgctttgggattggcgaa
cgctgcgagcatactttagaggaagtgggacgagacttcaaagttaccagagaaagaatc
cgccagattgaggccaaagccctgcgaaagctcagacatcccagccgaagccggcaactc
cgaagctttgtagaataa
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