Tabrizicola piscis: EI545_07095
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Entry
EI545_07095 CDS
T05742
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
taw
Tabrizicola piscis
Pathway
taw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI545_07095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taw03019
]
EI545_07095
Enzymes [BR:
taw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI545_07095
Messenger RNA biogenesis [BR:
taw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI545_07095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
CMS1
DEDD_Tnp_IS110
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZL58621
UniProt:
A0A3S8U4U9
LinkDB
All DBs
Position
1481531..1482883
Genome browser
AA seq
450 aa
AA seq
DB search
MTTFADLGLSPTILKALEKTTLKTPTPIQAQAIPHIMQGRDLMGLAQTGTGKTAAFGLPL
LHRLLDLGHPPGPKNVRALILAPTRELIGQIKDNFEVFTKGTAVKVTMVVGGASLFKQAQ
ALSKGTDILVATPGRLIDLLERGDVSLEKCAYLVLDEADHMLDMGFIHSLRKIAKHIPLK
RQTLLFSATMPKDISEIADTYLRDPIKVQVAPPGKPIERIVQGVHYIPNGDKARLLEEYM
KKHPGEQALVFGRTKHGSEKLMKLLATWGFKVGSIHGNKSQNQRDRTLTEFRSGQLDVLV
ATDVAARGIDIPTVRHVYNFDMPNVPENYVHRIGRTARAGAEGTAVAFCAPAEMGELQAI
EKLLKKPIPVLGGAPWSADMVAAAPKPGQNRGQRPGGRGGQKTGSSAPAKPQGQRPGGQK
PRSGGAPKPQGGSFAPRRADGAAGAKRRPG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaccacttttgccgacctcggcctttcgccgacaattctgaaggcgctggaaaagacc
acgctcaagacgcccacgccgattcaggcgcaggccattccacatatcatgcagggccgc
gacctgatgggtctggcccagaccggcaccggcaagaccgccgcctttggcctgccgctg
ctgcaccgcctgctggaccttggccacccgccgggaccgaagaacgtgcgcgcgctgatc
cttgcgccgacgcgcgaactgatcggccagatcaaagacaacttcgaggtcttcaccaag
ggcaccgctgtcaaggtgaccatggtcgtcggcggcgcctcgcttttcaaacaggcgcag
gccctgtccaagggcaccgacattctggtggccacccccggccgcctgatcgaccttctg
gaacgcggcgatgtcagccttgagaaatgcgcctatctggtgctggacgaagctgaccac
atgctggacatgggcttcatccactcgcttcgcaaaatcgccaagcacatcccgctgaag
cgtcagacgctgctgttctcggccaccatgccgaaggacatctcggaaatcgccgacacc
tatctgcgcgacccgatcaaggtgcaggtcgccccgcccggcaagccgatcgagcgcatc
gtgcagggtgttcactacatccccaacggcgacaaggcgcgtctgctggaagaatacatg
aaaaagcacccgggcgaacaggcgctggtcttcgggcgcaccaagcacgggtcggaaaag
ctgatgaagctgttggcgacatggggcttcaaggtcggctcgatccacggcaacaaaagc
cagaaccagcgcgaccgcaccctgacggaattccgcagcggtcagcttgacgtgctagtg
gcgaccgatgtcgccgcgcgcggcatcgacattccgacggtccgccatgtctacaacttc
gacatgccgaacgtgccggaaaactacgttcaccgcatcggccgcactgcgcgcgccggg
gcggaaggcacggctgtcgccttctgcgcaccggctgagatgggcgagttgcaggccatc
gaaaagctgctgaaaaaaccgatcccggttctgggcggcgcgccgtggtcggcggatatg
gtggcggcagcgcccaagccgggccagaaccgtggccagcgcccaggtgggcgcggcggg
caaaagaccggttccagcgcgccggccaaaccgcagggccaacgcccgggcgggcaaaag
ccgcgcagcggtggcgcaccaaagccgcagggcggcagctttgccccacgtcgggccgat
ggggctgccggcgccaagcgtcgcccgggctaa
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