Tabrizicola piscis: EI545_08135
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Entry
EI545_08135 CDS
T05742
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
taw
Tabrizicola piscis
Pathway
taw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EI545_08135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taw03021
]
EI545_08135 (rpoC)
03400 DNA repair and recombination proteins [BR:
taw03400
]
EI545_08135 (rpoC)
Enzymes [BR:
taw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EI545_08135 (rpoC)
Transcription machinery [BR:
taw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EI545_08135 (rpoC)
DNA repair and recombination proteins [BR:
taw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EI545_08135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AZL58811
UniProt:
A0A3S8U5D2
LinkDB
All DBs
Position
complement(1685072..1689310)
Genome browser
AA seq
1412 aa
AA seq
DB search
MNQELSTNPFNPVAPVKTFDEIKISLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMTEEDFLDAQDQYGADAFT
ANIGAEAIREMLAAIDLQAVADQLRDELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
ILTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGNPIIVPSQDMVLGLYYVTMERKGMAGEGMAFADMEEVEHAL
AAGAVHLHAKIKARLRQVDETGNIVWKRFDTTPGRLRLGNLLPLNAKAPFDLVNRLLRKK
DVQTVIDTVYRYCGQKESVIFCDQIMTLGFREAFRAGISFGKDDMVIPDTKWDLVNETKE
QVTGFELQYMDGLITQGEKYNKVVDAWTKCNDKVTEAMMATISATHYDANGAEKEPNSVY
MMAHSGARGSVIQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRSHDCGTENAITASAAVNDGEVIVPMGERVLGRV
AADDVLVPGTDEVLVARGELIDERRADLINNSGVATIRIRSPLTCEAEEGVCALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIEFRNAN
ILKNVNGEQIVVGRSMSIAIIDDVGQERAAHKLTYGAKLHVKDGEAVKRGTKLFEWDPFT
LPVIAEKTGVARFKDLVSGISVREDTDEATGMTQKIVADWRSVPKGGDLKPEIIVMDPAT
GDPVRNDQGAPISYSMSVDAILSVEDGQELRPGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAEADGYVRFGKDYKNKRRITVEPVDETLQAQEYMIPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILRILGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKL
EILDSGDTTLLKGEHVDKQELEEENLKARNRGLREASAEAILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVKKIASDRDSTVIEARK
SEAEHAAALAAPVEVMEAEVDTGLVDTVESRD
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactctcgaccaacccgttcaacccggttgcgcccgtcaagaccttcgac
gaaatcaagatcagcctggcctcgccagagcggattctgtcgtggtcctttggcgagatc
aagaagccggagaccatcaactaccggaccttcaaacccgagcgggacggcctgttctgc
gcccgtatcttcgggccgatcaaggattacgaatgcctctgcggcaaatacaagcgcatg
aaatatcgcggcgtcgtctgcgaaaagtgcggcgttgaagtcacgctgcaaaaggtgcgg
cgcgaacggatgggccatatcgaactggcagcacccgtcgcacacatctggttcctgaag
tcgctcccgtcccggatcggcctcatgctcgacatgacgctgcgcgatctggagcggatt
ctgtacttcgagaactatgtcgtgatcgagccgggtctgaccgacctgacctatggccag
ctgatgaccgaggaagacttcctcgacgcgcaggaccagtacggtgccgacgccttcact
gccaacatcggcgctgaagcgatccgcgaaatgctggccgccatcgacctgcaggccgtg
gccgaccagctccgcgatgagctgaaggaagcgacgggcgagctgaagccgaagaagatc
atcaagcgtctgaagatcgtcgagagcttcctcgaatccggcaaccgcccggagtggatg
atcctgaccgtccttccggtcatcccgccggaactgcgcccgctggtcccgctggacggc
ggccgcttcgccacgtccgacctcaacgacctctaccgccgggtcatcaaccgcaacaac
cgcctgaagcgcctgatcgagcttcgcgccccggacatcattgtccggaacgaaaagcgg
atgctgcaagaggcggttgacgccctcttcgacaacggccgccgcggccgcgtgatcacg
ggcaccaacaagcgcccgctgaaatcgctgtccgacatgctgaaaggcaagcagggccgc
ttccgccagaaccttctcggcaagcgggtcgacttctccggtcgttcggtcatcgtgacc
ggcccggaactgaagctgcaccagtgcggcctgccaaagaagatggcgctcgaactcttc
aagcccttcatctactcgcgtctggaagccaagggcctctccagcaccgtgaaacaggcc
aagaagctggtcgagaaagagcgtccggaggtctgggatatcctcgatgaggtgatccgc
gaacacccggtcctcctcaaccgcgccccgacgctgcaccgcttgggcatccaggcgttt
gagccgatcctgatcgaaggcaaggcgatccagctgcaccccttggtctgcgccgcattc
aacgccgacttcgacggcgaccagatggctgtccacgtccccctctcgctggaagcccag
ctggaagcccgcgtcctgatgatgtcgacgaacaacgtcctgtcgcccgccaacggcaac
ccgatcatcgtgccgtcgcaggacatggtcctcggcctctactacgtcacgatggagcgt
aagggcatggccggtgaaggcatggcctttgccgacatggaagaagtggaacacgccctt
gctgcgggcgctgtgcacctgcacgccaagatcaaggcccggcttcgtcaggttgatgaa
accggcaacatcgtctggaagcggttcgacaccacccccggccgcctgcggcttggcaac
ctcctgccgctgaacgccaaggcaccgtttgacctcgtcaaccgcctgctgcggaagaag
gacgtgcagaccgtcatcgacaccgtctaccgctactgcggccagaaggaatcggtgatc
ttctgtgaccagatcatgaccctcggcttccgtgaggcgttccgcgccggcatctccttc
ggcaaggacgacatggtgatcccggacaccaagtgggacttggtgaacgagacgaaggaa
caggtcaccggctttgaactgcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaggtcgtcgacgcctggaccaagtgcaacgacaaggtgaccgaggcgatgatggcc
accatctcggccacgcattacgacgccaacggcgccgagaaggagccgaactcggtctac
atgatggcccactccggtgcccggggttcggtcatccagatgaagcagcttggcgggatg
cgcggcctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgactcacggcgcgcggaaaggtctg
tccgacaccgcactgaagacggcgaactcgggctatctgacccgccgtctggtggacgtg
gcgcaggactgcatcgtgcgctcgcacgactgcggcaccgaaaacgcgatcaccgcttcg
gcggctgtgaacgacggtgaagtcatcgtcccgatgggcgaacgcgtccttggccgcgtc
gcggctgatgacgtgctggttcccggcaccgatgaggttctggtggcacggggtgagctg
atcgacgaacgccgcgccgacctgatcaacaactcgggcgtcgccaccatccgcatccgc
tcgccgctgacttgcgaagcggaagagggtgtctgcgcactctgctatgggcgtgacctt
gcccgcggcacgctggtcaacatcggtgaagcggtcggcatcatcgccgcccagtccatc
ggtgaacccggcacccagctgacgatgcggacgttccacatcggcggcgtggcgcagggc
ggccagcaatccttcctggaagccagccaagagggcaagatcgagttccgcaatgccaac
atcctgaaaaacgtcaacggcgaacagatcgtcgttggccgcagcatgtcgatcgcgatc
atcgacgacgtgggtcaggaacgggcagcccacaagctgacctatggcgcgaagctgcac
gtcaaggatggcgaagcggtcaagcgcggcacgaaactgttcgaatgggaccccttcacc
ctgccggtcatcgccgaaaagaccggcgtggcacggttcaaggatctcgtctcgggcatc
tcggtccgcgaagacaccgacgaagccaccggcatgacccagaagatcgtcgccgactgg
cgctcggttccgaagggcggcgacttgaagcctgaaatcatcgtgatggaccccgccacc
ggcgatccggtccgcaacgatcagggcgcgccgatcagctactccatgtcggtggacgca
attctgtcggtcgaagacggccaggaactgcgcccgggtgacgtggtggcgcgtattccg
cgcgaaggtgccaagaccaaggacatcaccgggggtcttccccgcgtggccgaactcttc
gaagcccgtcgcccgaaagaccacgcgatcatcgcggaagcggacggctatgtccgcttt
ggcaaggactacaagaacaagcgccgcatcaccgtggaaccggtcgatgagacgctgcag
gcccaggaatacatgatccccaagggcaagcacatcccggtgcaggaaggcgacttcgtg
cagaagggtgactacatcatggacggcaacccggccccgcatgacatcctgcggattctg
ggggttgaggctctggcgaactacatgatcgacgaagtgcaggacgtctatcgcctgcag
ggcgtgaagatcaacgacaagcacatcgaagtgattgtccgccagatgctgcaaaagctg
gagatcctcgacagcggcgacaccacgctgctgaaaggggagcatgtcgacaagcaggag
cttgaggaagaaaacctcaaagcccgcaaccgcggcctgcgcgaagccagtgccgaggcg
atccttctggggatcaccaaggcgtccttgcagacccgcagcttcatctcggccgcgtcc
ttccaggaaaccacgcgcgtcctgaccgaggcttcggtccagggcaagcgcgacaaactg
gtcggcctcaaggaaaacgtcatcgtcggccgcctgatcccggccggcaccggtggcgcc
accagccgcgtgaagaagatcgcctccgatcgcgacagcacggtgatcgaagcccgcaag
agcgaggcggaacacgccgccgcccttgccgcaccggtcgaggtgatggaagccgaggtt
gacaccggtctggtcgacacggtcgaaagccgcgattga
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integrated database retrieval system
