Tabrizicola piscis: EI545_10955
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Entry
EI545_10955 CDS
T05742
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
taw
Tabrizicola piscis
Pathway
taw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI545_10955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taw03019
]
EI545_10955
03009 Ribosome biogenesis [BR:
taw03009
]
EI545_10955
Enzymes [BR:
taw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI545_10955
Messenger RNA biogenesis [BR:
taw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI545_10955
Ribosome biogenesis [BR:
taw03009
]
Prokaryotic type
rRNA helicases
EI545_10955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZL59319
UniProt:
A0A3S8U713
LinkDB
All DBs
Position
complement(2244801..2247128)
Genome browser
AA seq
775 aa
AA seq
DB search
MTMTNVAAPLAQALAGKGYEVLTAVQAAVLAEGVAGRDMLVSAQTGSGKTVAFGLAIAPE
ILAGQDRLLYADQPLALIIAPTRELALQVARELEWLYAGAGAKIATCVGGMDYRTEKRAL
ERGAHIVVGTPGRLRDHIERRSLDLSGLRAAVLDEADEMLDLGFAEDLEFILAAAPEDRR
TLMFSATVPKEIEKLAGTFQKDALRIQAQGEARQHVDIEYRAISVAVRDREHAIFNILRF
YESQTAIVFCKTRVNVNHLMARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIAT
DVAARGIDLPGLELVIHADLPSNSEILLHRSGRTGRAGKKGVSALIVTPAEFKKAQRLLQ
GAKVTAEWGSAPGADEVQAKDDMRILEHPTLSAPIGDEAGIAGALLEQVGPEAIAAAFVR
LWREGRSAPEVLSTDGPTPPPSAPRERGEFGPSVWFRLSVGRAGRAEARWLLPKICDAGG
IGKDGIGAIRVREDETFVQIAAPLADKFGASVELDRDLLMQRIEGEPDLDRPRAPSAKFE
RPERSEPRREKPAYTPKPPRVVEDDDAPVRAEPAKKPYVKREDSPRPAAAAKPAYAKPAY
SKPDWQDKPKPYAKREDSPRPARAPYDPDRAARPASGDDAAKKPRWSPDQKSAPRSAGYK
SQGGPAGKPARAEGYKSHAATGTGYKPKAEGYKPREDSFKPRDDSDRPARKPYAPKGDDA
RPFVKREGPPKAGGFKSHAAGGKKPFDKAAPRPAKPKADAKDTSKRFVPPKGPKR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgacaaacgtggccgcgccattggcgcaggctttggcaggcaagggctatgaa
gtcctgaccgccgtgcaggcagctgtgctggccgaaggcgtcgccgggcgcgacatgctg
gtttcggcgcagaccggatcgggcaagaccgtggcctttggtctggcgattgcgccggaa
attctggccgggcaggaccggctgttgtacgccgatcagcccttggcgctgatcatcgcc
ccgacccgggaacttgccctacaggtcgctcgcgaactggagtggctctacgctggcgcc
ggggcaaagatcgccacctgcgtgggcggcatggactaccgcaccgaaaagcgcgcgctt
gaacgtggggcgcatatcgtcgtcggcacgcccggccgcttgcgcgaccacatcgaacgc
cgcagccttgacctttccggcctgcgcgccgccgttctggacgaagccgatgagatgctg
gaccttggctttgccgaggatctggaattcatccttgccgccgccccggaagaccgccgc
acactgatgttctcggccacagtgccgaaagagatcgaaaagctggccggaaccttccag
aaggacgcgctgcgcattcaggcgcagggtgaggcgcggcagcacgtcgacatcgaatac
cgcgcgatcagcgttgccgtgcgcgaccgggaacacgcgatcttcaacatcctgcgcttc
tacgaatcgcaaaccgcaatcgtgttctgcaagacgcgggtgaacgtgaaccacctgatg
gcccgcatgggcaaccgcggctttcaggtcgtggccctgtcgggtgagctttcccagcag
gaacgcacccacgcgctgcaggcgcttcgcgatggccgggcgcgcgtgtgtattgccacc
gatgtggctgcacgcggcatcgacctgccgggcctggaactggtgatccatgccgacctg
ccctcgaattcggaaatcctgctgcaccggtcgggacggaccggtcgggccgggaaaaag
ggggtctcggcgcttatcgtgaccccggcggaattcaagaaggcccagcgcctgctgcaa
ggcgcaaaggtcaccgcggaatggggttcagcccccggcgcggatgaggttcaggccaag
gatgacatgcgcattctggaacacccaaccctgtctgcccccatcggcgacgaggcgggg
attgcaggcgcccttctggaacaggtcggccccgaagccatcgccgccgctttcgttcgg
ctgtggcgcgaaggccgctcggcccccgaggttctgtcgaccgacggcccgaccccgccg
ccctcagccccgcgtgaacggggcgagttcgggccttcggtctggttccgtctgtccgta
ggccgcgctggccgggccgaggcgcgctggctgctgccgaagatctgtgacgccggcggc
atcggcaaggacggcatcggtgcgatccgcgtgcgtgaggatgaaaccttcgtccagatc
gcagccccgctcgccgacaagttcggtgcttcggtggaacttgaccgtgacctcctgatg
caacgcatcgagggggaacctgaccttgatcgcccccgcgcgccctcggccaagttcgaa
cggcccgaacgcagcgaaccgcgccgggaaaagcccgcctacactccgaaaccgccgcgc
gtggttgaggatgacgacgcacccgtgcgcgcggaaccggcgaaaaagccctatgtgaaa
cgggaagacagcccccgcccggcggcggctgcgaaaccggcctatgccaaacccgcctat
tcaaaaccagactggcaggacaagccgaagccctacgccaagcgcgaagatagcccgcgc
ccggcccgcgcgccctatgatccggaccgcgccgcgcgtccggccagcggcgatgacgcc
gccaagaaaccccgctggtcgcccgaccagaaatccgcgccccgttcggccggctacaaa
agccagggcggacctgccgggaaaccggcgcgtgcggaaggctacaaaagccatgccgcc
actggcaccggctacaagcccaaggccgaaggctacaagccccgcgaagacagcttcaaa
ccgcgcgatgacagcgaccgcccggcccgcaagccctacgccccgaaaggcgacgacgcg
cgccctttcgtaaagcgtgaaggcccaccgaaggcaggggggttcaaaagccacgctgcc
ggcggcaagaagccctttgacaaagccgcccctcggcccgcaaagccgaaggcggatgcc
aaggacacctccaagcgcttcgtgccgccaaaagggccaaaacgctaa
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