Tabrizicola piscis: EI545_13565
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Entry
EI545_13565 CDS
T05742
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
taw
Tabrizicola piscis
Pathway
taw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI545_13565 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taw03019
]
EI545_13565 (rnr)
03016 Transfer RNA biogenesis [BR:
taw03016
]
EI545_13565 (rnr)
Enzymes [BR:
taw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EI545_13565 (rnr)
Messenger RNA biogenesis [BR:
taw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EI545_13565 (rnr)
Transfer RNA biogenesis [BR:
taw03016
]
Prokaryotic type
tRNA degradation factors
EI545_13565 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
ZSWIM1-3_C
Motif
Other DBs
NCBI-ProteinID:
AZL59772
UniProt:
A0A3S8U7S9
LinkDB
All DBs
Position
complement(2779923..2782154)
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AA seq
743 aa
AA seq
DB search
MSSFPSKDAIRQWITDNPGLSAKRDIAKAFGIKGDGRIELKRLLRELEGEGVVEKTMRRF
HEKGVLPPVAVLQVLPPDSGGDLYARPLEEGVDDTPRILIIPKKGDPALGGGDRILARLA
KVDLDDYAYEARLIRKLGSNPAKVLGVFRVSAEGGCIQPIDKGSDKEWRVSSDMTLGAKD
GELVEGELVGTRRMGLPAARVLARLGDPSGPRAASLIAIHQHGIPDQFPDAVILEADRAE
PVGLKGREDLRDLPLLTIDPVDARDRDDAVLAEADPDPGNPGGFILWVAIADVAHYVTPG
SALDREARKRGNSTYFPDRVVPMLPDILSGDLCSLHEAVDRACLAVRMVIDAGGHKRSHR
FTRGLMRSAASLNYEQVQAAIDGTPDAATAPLLEPVLRPLYAAYAALTRAREARQPLELD
LPERKIVLDDDGHVTSVAFKDRLDAHRLIEEFMVLANVAAAEELIRLKRPLLFRVHEEPS
PLKLDALREVAEGAGMTLAKGQVLQTSHLNRLLAQAEGTEFDELINLSTLRSMTQAYYHP
ENFGHFGLALRNYAHFTSPIRRYSDLIVHRALIAGHGWGSDGLSAWDVENLEETGKLISE
AERRSMAAERDTNDRYLAAYLADRVGAEFAGRVSGVQRFGLFIRLDETGADGLIPIRALG
REFFHYDEGSQTLTGSETGLTLGLGQKVMVRLAEAVPVTGGLILELLSVEGATMKPAGRK
SGKYQPRKPAQAAAKRRVVRRRK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgagctcattcccttcaaaagacgcgatccgacagtggatcaccgacaaccccggcctc
tcggccaagcgcgacattgccaaggccttcggcatcaagggcgatggccggatcgagctg
aagcgcctgctgcgcgagcttgagggcgagggcgtggtggaaaagaccatgcggcggttc
catgagaagggggtgctcccgccggtggccgtgttgcaggtgttgccgccggattctggc
ggcgacctttacgcccggccgctggaggagggggtggacgacacccctcgcatcctcatc
atcccgaagaagggcgatccggcccttggcggcggcgaccgcatccttgcgcggctggcg
aaggtggatctggatgattacgcctatgaggcgcggctgatccgcaagctggggtcgaac
ccggccaaggtgctgggcgtcttccgggtgagtgccgaaggcgggtgcatccagccgatc
gacaaggggtcggacaaggaatggcgcgtgtcgtcggacatgacactgggcgccaaggac
ggcgagctggttgaaggcgagttggtcgggacccgccgcatgggccttcccgccgcgcgg
gtgctggcccggctgggcgacccctccggtccccgcgccgcaagtctgattgcgatccat
cagcacggcatccccgaccagttccccgacgccgtgatccttgaagccgaccgcgccgaa
cccgtgggtctaaagggccgcgaggacctgcgcgatctgcccctgctcaccatcgacccg
gtcgatgcccgcgaccgggatgacgccgtgctggccgaagccgacccggaccccggcaac
cccggcggcttcatcctctgggtcgccatcgccgacgtggcgcattacgtcacgccgggc
tcggccttggaccgtgaggcgaggaagcgcgggaattcgacctacttccccgaccgtgtc
gtgccgatgctgcccgatattctgtcgggcgatctctgctcgctgcacgaagccgtggac
cgcgcctgtctggccgtgcggatggtgatcgacgcgggcggccacaaacgcagccaccgg
ttcacacggggcctgatgcggtctgcggcctcgctgaattatgaacaggtgcaggcggcg
atagacggcacccccgatgccgccaccgcgcctctgcttgaacccgtgctgcgcccgctg
tacgccgcctacgccgccctgacccgcgcacgcgaggcgcgtcaaccgctggagcttgac
ctgcccgagcgcaagatcgtgctggatgacgatggccacgtcacctcggtcgcgttcaag
gaccggctggacgcccaccggctgatcgaggaattcatggtgctggccaacgtcgccgcc
gccgaggaactgatccgcctgaagcgccccttgctgttccgggtgcacgaagaaccctca
cccctgaagctggacgctctgcgtgaggtggccgaaggcgccggcatgacccttgccaag
gggcaggtgctgcagaccagccacctgaaccggctgctcgcccaggccgaggggacagag
tttgacgagttgatcaacctgtccaccctgcggtcgatgacgcaggcctattaccacccc
gagaatttcgggcatttcggccttgcgctgcgtaactacgcgcatttcacctcgcccatc
cggcggtattctgacctgatcgtccaccgcgcgctgattgccgggcatggctggggctca
gacgggctatcggcctgggacgtggagaacctggaggaaaccggcaagctgatctcggaa
gccgaacggcgcagcatggcggccgagcgggatacgaatgaccggtatctggccgcctac
cttgccgaccgggtcggggcagagttcgcggggcgggtctcaggggtgcagcgctttggc
ctgttcatccggctggacgagaccggggccgacgggctgatcccgatccgcgcccttggg
cgtgagttctttcactatgatgaaggcagccagaccctgacgggttctgaaaccgggctg
acccttgggctgggccaaaaggtcatggtgcggctggccgaggccgtgccagtgacgggc
gggctgatcctggagcttctgtcggtcgaaggcgccacgatgaaaccggccgggcgcaaa
tcgggcaagtaccagccccgcaaaccggcccaggccgcggcaaagcggcgggtggtgcgc
cggcggaaatga
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