Tabrizicola piscis: EI545_16950
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Entry
EI545_16950 CDS
T05742
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
taw
Tabrizicola piscis
Pathway
taw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI545_16950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taw03019
]
EI545_16950
03009 Ribosome biogenesis [BR:
taw03009
]
EI545_16950
Enzymes [BR:
taw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EI545_16950
Messenger RNA biogenesis [BR:
taw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EI545_16950
Ribosome biogenesis [BR:
taw03009
]
Prokaryotic type
rRNA processing factors
EI545_16950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AZL60361
UniProt:
A0A3S8U9W9
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All DBs
Position
3487553..3490306
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AA seq
917 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFAEIHPDYYQIPVADRKALIEEERQLARAEEEEDNRRTRRRPARSQERAE
KVKTSDAVTEGPTGMDVVDLDDDEGDVPVVAAAAAPEAAPSHDHDHDHAHDHDQDRNAAP
SEEASEGERPYRAMDHASETDDEIESIAEEDVSEEIAAPRRTPRARRYKIQEVVKVRQIM
LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIAQEIE
VPEGAGLIIRTAGAKRTKPEIKRDYEYLMRLWEQIRELTLKSIAPAKIYEEGDLIKRSIR
DLYSREIDEVIVEGEGGYRTAKDFMRMIMPSHAKQVVRHADPVPLFAKYQVESYLGGMFN
PVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEASDEVARQLRLRDLA
GLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEST
TQPCPHCHGTGLIRSDDSMALQVLRALEEEGTRKRSKEVLLKAPIGIVNYLINGKREHIA
LIEARYGMSVRIEADPMLVSPDYSIEKFKTALRVVPETPVISGHAGLMGAAVDEDEDEDL
VDDLIEEEAAEGVEAAEPVARAAAAEGDNGAPGKKKRRRRRRRRGGARDGEAVANGAAGE
DDGDEDGEGDGDGDEAVVTAEPVAEGEDKAGPRKRTRKPRARKGDAARVVEAAPEGVVET
VAEAESAPAEAAAVEAAPAKPAARKRAPRGKAAVTEAAPEPVAEAVAEPVAEAPAPEAAP
AKPARSRAPRAKAAEKAPAKAVAEPVAEAVVEPAPALAPDPGMEPTVETVVADPAEGAAV
ADDPAKPKRKGWWSLGR
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaagatgctgatcgacgccacccatgccgaggaaactcgggttgtggtggtg
gatggaaacaaggttgaagagttcgacttcgagaccgtcaacaaacgccaacttgccgga
aacatataccttgccaaagtaacccgggtggagccttcgcttcaggcggcctttgtcgaa
tatggcggcaaccggcacggatttctggcctttgccgaaattcaccccgattattaccag
atcccggtcgccgaccgtaaggcgctgatcgaggaagagcgccagctggcgcgcgccgaa
gaggaagaagacaaccgtcggacccgtcgccgccccgcgcggtcgcaagagcgggccgaa
aaggtcaagacctcggatgccgtcacagaaggcccgacgggcatggacgtggtcgatctg
gacgatgacgagggcgatgtgcccgttgtcgctgccgccgccgcgcccgaagccgcgccg
agccatgaccatgatcacgatcatgcgcacgatcatgaccaggaccgcaacgccgcacct
tctgaagaagcaagcgagggcgagcgtccctatcgcgctatggaccacgccagcgagacg
gatgacgagatcgaatccatcgccgaagaggacgtgtccgaagaaatcgccgcaccgcgc
cgcacaccgcgcgcccggcgctacaagattcaggaagtcgtcaaggtccggcagatcatg
ctggtgcaggtcgtcaaggaagaacgcggcaacaagggcgctgcgctgaccacctatctg
tcgcttgccggtcgctactgcgttctgatgccgaacaccgcgcggggcggcgggatttcc
cgcaagatcacgcaggcggctgaccggaagaagctgaaagagatcgcgcaagagatcgag
gtgccggaaggtgccgggctgatcatccgtacggcgggtgccaagcggaccaagcccgag
atcaagcgcgactatgaatatctgatgcgcctttgggaacagatccgcgagttgacgctg
aaatccatcgcgcccgccaagatctatgaggaaggcgacctgatcaaacggtcgatccgc
gatctttacagccgcgagattgacgaggtgatcgtcgaaggcgagggcggctatcgcacc
gccaaggacttcatgcggatgatcatgccaagccacgccaagcaggtggtgcgtcatgcc
gacccggtgccgttgttcgcgaagtatcaggtcgaaagctatctgggcgggatgttcaac
ccggtcgtccagctgaaatccggtggttacatcgtgattggcgtgaccgaggcgctggtg
gcgatcgacgtgaactctggccgggccacgaaggaagggtcgattgaggaaaccgctctc
aagaccaaccttgaggcgtcggatgaggtggcacggcagttgcgcttgcgcgaccttgcc
gggctgatcgtcatcgactttatcgacatggaagagcgcaagaacaacgctgcggtcgag
aagcggttgaaagacaagctgaaaaccgaccgcgcgcggattcaggtcggccggatttcc
ggctttggcctgatggagatgagccgtcagcgtttgcgtccggggatgctggaaagcacc
acgcagccttgcccgcattgccatggcacggggttgatccggtctgacgacagcatggcg
ctgcaggtcctgcgcgcgctggaggaagaaggcacgcggaagcggtcgaaagaggtgctg
ctgaaggcgccgattggcatcgtgaactatctgatcaacggcaagcgcgaacatatcgcg
ctgatcgaggcgcgctatgggatgagcgtgcggatcgaggcggacccgatgctggtcagc
cccgattacagcattgagaagttcaaaacggcgctgcgcgttgtgccggagactccggtc
atttccggccatgccgggctgatgggcgcggcggtggacgaggatgaggatgaagatctg
gtcgatgacctgatcgaagaggaagcggccgagggtgtcgaagcagccgagccggtggca
cgggctgcggcggctgagggcgacaatggtgcccccgggaagaaaaagcgccgtcggcgt
cggcgtcggcgcggcggcgcgcgggatggcgaggccgtggcgaacggtgccgcgggcgag
gatgacggcgacgaggacggcgaaggcgatggcgacggtgacgaggctgtcgtgacggcc
gagccggtcgctgagggtgaggacaaggctgggccacgcaagcggacccgcaagccgcgt
gcccggaagggtgatgctgcgcgcgtggttgaagcggcgcctgagggtgtggtggaaacg
gtggcggaggcggagtctgcgccggctgaggcggcggcggttgaggctgctccggcaaag
cctgcggcgcgcaagcgtgcgcctcgtgggaaggctgctgttactgaagctgcacctgaa
ccggttgcggaagctgtggccgaacctgtcgcggaggctcctgcccctgaggccgctccg
gccaagcctgcgcgtagccgggcgccacgggccaaggcggccgagaaggcgcctgccaag
gcggtcgcggagccagtggctgaagcggttgttgaacccgccccggcccttgcccccgat
ccggggatggagccgacggtcgagaccgtcgtggccgatcctgccgaaggggcggcggtc
gctgatgatccggccaagcccaagcgcaagggctggtggtcgctggggcgctaa
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