Tabrizicola piscis: EI545_17250
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Entry
EI545_17250 CDS
T05742
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
taw
Tabrizicola piscis
Pathway
taw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
taw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EI545_17250 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taw03021
]
EI545_17250 (rpoD)
Transcription machinery [BR:
taw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EI545_17250 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF7785
DUF1451
Motif
Other DBs
NCBI-ProteinID:
AZL60416
UniProt:
A0A3S8U9Z4
LinkDB
All DBs
Position
3549717..3551708
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AA seq
663 aa
AA seq
DB search
MALKDTDDAKPEADEQDVSLDMSQAAVKKMIADAKERGYITYDQLNTVLPPEQVSSEQIE
DVMSMLSEMGINIIEDDEAEEGAEPVGELVEVSTSREVAVAGTSAEALDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAIIIWRDELLSEDILLRDVID
LEATFGRSLDGEEDMDGPALDEVDVDAAPRRAGGAAEPELDADGNPLAREADDDEDDEAS
NMSLAAMEAALKPRVLETLDLIARDYAKLSDMQDLRMNAALSKAQHFSTAEEAAYQKLRS
EIVLLVNELHLNNSRIEALIDQLYGINRKIMSINSSMVKLADAARINRREFIDEYQGYEL
DPTWLDRMAQKSGRGWAALLDKSRDAIEDLRAEMATVGQYVGVDISEFRRIVNQVQKGEK
EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMP
LEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLAS
LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF
LDQ
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggccctcaaagacactgacgacgccaagcccgaagccgacgagcaggacgtttcgctc
gatatgagccaggcggccgtcaagaagatgatcgccgacgcgaaggagcgtggctacatc
acctacgaccagctgaacaccgtcttgccgcccgaacaggtgtcgtcggagcagatcgag
gacgtgatgtcgatgctgtccgagatgggcatcaacatcatcgaggatgacgaagccgaa
gaaggcgccgaacccgtgggcgagctggtcgaggtgtcgaccagccgcgaagttgccgtt
gccggcacctcggccgaggcgctggaccgtaccgatgacccggtgcggatgtatctgcgc
gagatggggtcggttgagctgctgtcgcgcgagggcgagattgccatcgccaagcggatc
gaggctggccgcaacacgatgatcgctggcctgtgcgaaagcccgctgacgtttcaggcc
atcatcatctggcgcgacgaacttctgtccgaagacatcctgctgcgtgacgtgatcgac
cttgaggccacctttggccgcagccttgacggcgaagaggacatggacggccccgcgctg
gacgaggttgacgtggacgcggccccccgccgcgctggcggcgctgccgagcccgagctt
gacgccgatggcaacccgctggcccgcgaagccgacgatgacgaggatgacgaagcctcg
aacatgtcgctggccgcgatggaggccgcgctgaagccgcgcgttcttgaaacgctggac
ctgatcgcccgcgattatgccaagctgtccgacatgcaggacctgcggatgaatgcggcg
ctgtccaaggcgcagcatttttcgaccgcggaagaggctgcttatcagaagctgcggtcg
gaaatcgtgcttctggtgaacgagctgcacttgaacaacagccggatcgaagcgctgatc
gaccagctttacggcatcaaccgcaagatcatgtcgatcaactcttccatggtcaaactg
gccgatgccgcgcggatcaaccgccgcgaattcatcgacgaataccaagggtacgagctg
gacccgacctggcttgaccggatggcgcagaaatccgggcggggatgggcggcgctgctg
gacaagtcgcgcgatgcgattgaagacctgcgggccgagatggcgacggtgggccagtat
gtcggcgtcgacatcagcgagttccgccggatcgtgaaccaggtccagaagggcgagaaa
gaggcgcgtcaggccaagaaggaaatggtcgaggcgaacttgcggctggtgatctccatc
gccaagaaatacacgaaccggggcctgcaattccttgatcttattcaggaaggcaacatc
ggcctgatgaaggccgtggacaagttcgagtatcggcggggctacaagttctccacctac
gcgacctggtggatccgtcaggcgatcacccggtcgattgccgatcaggcgcggacgatc
cggatcccggtccatatgatcgagacgatcaacaagctggtgcgcactggtcgccagatg
ctgcacgagatcggccgcgaaccgacgcccgaggaactggccgaaaagctccagatgccg
ctggaaaaggtccgcaaggtgatgaagatcgccaaggaaccgatttcgctggagacgccg
attggcgacgaggaagacagccagcttggcgacttcatcgaggacaagaatgcgatcctg
ccgctggacagcgccattcaggagaacctgaaggaaaccacgacccgggttctggcgtcc
ctgaccccgcgtgaggaacgcgtgctgcggatgcgctttggcatcgggatgaacacggat
cacacgctggaagaagttggccagcagttcagtgtcacccgcgaacgtattcgccagatc
gaagcgaaggctttgcgtaagctgaagcatcctagccggtcacggaagctgcggagtttc
ctcgatcaatag
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