Tamlana sp. s12: JJL45_06630
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Entry
JJL45_06630 CDS
T10518
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tay Tamlana sp. s12
Pathway
tay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJL45_06630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tay03019
]
JJL45_06630
Enzymes [BR:
tay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJL45_06630
Messenger RNA biogenesis [BR:
tay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJL45_06630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
Fe-ADH
P-loop_SecA
Shikimate_DH
DUF7115
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQY83660
LinkDB
All DBs
Position
1541908..1543212
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AA seq
434 aa
AA seq
DB search
MSFQSLGLSEALLKAISKKGYTTPSPIQEKAIPPVLEGHDVLASAQTGTGKTAGFTLPLL
HLLSENPKEKYKPIRALILTPTRELAAQVYANVREYSEFLNLRSAVIFGGVNQKPQAATI
RQGVDILVATPGRLLDLQSQGLLSLKRVEIFVLDEADRMLDMGFLRDIEKVIKSMPEKRQ
NLMFSATFSKDIKKLAHGILNHPVQVEATPENTTVEAISQKVYRVAKGLKTGLIIKLISE
GNWKQVLVFTRTKHGANKLCEKMDKAGITAAAIHGNKSQGARTKALSGFKSGRVRVLVAT
DIAARGLDIPLLPHVINFELPNVSEDYVHRIGRTGRAGAKGEAISLVSADETTFLRDIEK
LIELKLPVEIVEGFEPDPNASTVPVKPGQGRQNRRPQKSKSNKPNNSGGSGEGSRRNSGR
NNKSRRPRRSNEGR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcaatctttgggactgtctgaagccctgctaaaagcaattagcaaaaaagga
tacacaacaccatcaccaattcaagaaaaagccattccacccgtattagagggacatgat
gttttagcatcggcacaaacaggaacaggaaaaacagctggttttactttaccactttta
catttgctttctgaaaatccgaaggaaaaatataagcccattcgtgctttaattttaacg
ccaacacgagaattagcagcgcaagtttatgcgaatgttagagaatatagcgagttttta
aacttacgaagcgccgttatctttggtggtgtaaaccaaaaacctcaagccgcaaccatt
cgccagggggttgatattttagtagccactccagggcgtttattggatttacaaagccaa
ggcttattatcgctaaaacgtgtagaaatttttgttttagatgaagccgaccgtatgtta
gatatggggtttttaagagatattgaaaaagtgattaaaagtatgccagagaaacgtcag
aatttgatgttttcggcaaccttttcaaaagatattaaaaagttagcccatggcatttta
aatcatccggttcaggttgaagcgactccagaaaacacgacggttgaagcgatttcacaa
aaggtatatcgcgttgccaaagggttaaaaacagggttgattattaaattaatttctgaa
gggaattggaaacaggttttagtatttactagaacaaaacatggagccaataaactttgt
gagaaaatggataaagctggcattacagcagctgccattcacggaaataagagtcagggg
gcgagaacaaaggccttatctggttttaaatcgggtcgtgttcgtgttttagtggcgact
gatattgctgcaagagggcttgatattccgttattaccacacgtgattaactttgagtta
cctaatgtttctgaagattatgtacaccgcattggtaggacaggaagagcaggagctaaa
ggtgaagctatttctttagtaagtgccgatgaaactacgtttttacgtgatatcgaaaaa
ctaattgagttaaagcttcctgtagaaattgttgaaggtttcgagcctgatcctaatgca
tcaacggtacctgtaaaaccaggtcagggcagacaaaaccgaagacctcaaaaaagtaaa
tcaaataagccgaataactctggaggatctggagaggggtctcgaagaaattctggaaga
aataataaatccagacgcccaagaaggagtaatgaagggaggtag
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