Tamlana sp. s12: JJL45_07485
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Entry
JJL45_07485 CDS
T10518
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tay Tamlana sp. s12
Pathway
tay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJL45_07485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tay03019
]
JJL45_07485
Enzymes [BR:
tay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJL45_07485
Messenger RNA biogenesis [BR:
tay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJL45_07485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
MTS_N
Cas3-like_C_2
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QQY83815
LinkDB
All DBs
Position
complement(1728422..1729663)
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AA seq
413 aa
AA seq
DB search
MSFKDLKLNRPILRAVAEAGYDNPTLVQEKTIPLILEKKDMIVSAQTGTGKTASFALPIL
QSLFDRQDAPKKGKQVKALIVSPTRELASQISDNFNKYSTYTNLRTAVVYGGISIEPQKE
VLKKGVDILIATPGRLLDLHKQDIVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCTKE
KQILLFSATIPYKVEQLANLILNNPERVEVAQNASTSKNVNQLLYYVPKRNKIELCLHLL
RNTIKGHIIIFRRTKFGVEKLEQTLLKNGYKVESIHGDKSQTARQDALSNFKNRDANILI
ATDVAARGIDINDLDAVINFDLPNIPETYVHRIGRTARAGNTGVAYSLCSADEKTYVQTI
QQLIQVQLDVIEDHPYPLDPKAKPIVHKSKKTGSKHKKGRKSEASKKKKKRWY
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagatttaaaactcaacaggccaattttaagagctgtagctgaagctggg
tatgataacccgactttagttcaagaaaaaaccatccctttaatattagaaaaaaaggat
atgattgtttcggctcaaaccggaacaggaaaaacagcttcttttgccctgccaatactt
caatctttatttgaccgacaagatgccccaaaaaaaggtaaacaagtaaaagccctcatt
gtaagccctacaagagaattggcatcacaaattagcgacaactttaataaatatagtacc
tatactaatttaagaacagctgttgtttacggtggtatttctattgaacctcaaaaggaa
gttttaaaaaagggtgtcgatattttaatagcaacacctggtcgtttattagatttacac
aaacaagatattgtcaatttagactatgtagaaacgctagttttagatgaagccgatttg
atgttagacatgggttttattgatgatgttaaaaaaattgaacgcctctgcaccaaagaa
aaacaaattttacttttttcggcaactattccatacaaggtagaacaattagcaaattta
atattaaataatcctgaacgtgttgaagttgctcaaaacgcttcaacgtctaagaatgtt
aatcaattgctttattatgtgcctaaacgcaataaaattgaattgtgtttgcacttacta
agaaatacgattaagggccatataatcattttcagacgtaccaaatttggcgttgaaaag
ctagaacaaaccttgcttaaaaatggttataaagtagaaagtatacatggtgacaaaagt
cagactgcaagacaggacgccttaagtaatttcaaaaatagggatgctaatattttaata
gctaccgatgttgctgcccgaggaattgacattaatgatttagatgctgttattaacttt
gatttaccaaatatcccagaaacttatgtccatcgtataggacgaacggctagagcgggt
aatacgggtgtagcatattcgctgtgttctgctgatgagaagacttatgtacaaaccata
caacagcttattcaagtccaattggatgttattgaagaccacccatatccattagacccc
aaagccaagcctattgttcataaatccaaaaaaacggggagtaaacacaaaaaagggcga
aagagcgaggcttcaaaaaagaaaaagaaacgctggtattaa
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