Tamlana sp. s12: JJL45_07725
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Entry
JJL45_07725 CDS
T10518
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tay Tamlana sp. s12
Pathway
tay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJL45_07725 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tay03021
]
JJL45_07725 (rho)
03019 Messenger RNA biogenesis [BR:
tay03019
]
JJL45_07725 (rho)
Transcription machinery [BR:
tay03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JJL45_07725 (rho)
Messenger RNA biogenesis [BR:
tay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JJL45_07725 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
AAA_22
DDHD
Motif
Other DBs
NCBI-ProteinID:
QQY83860
LinkDB
All DBs
Position
complement(1781395..1783083)
Genome browser
AA seq
562 aa
AA seq
DB search
MFEISQLKEKKLADLQEIAKKLNVPKFRSLKKLDLVYQILDQQAADPKAVKAAVTPTEPI
EPAKNIEEKDTKTAKPVTRKPRQRVQKPVRNTPQKAEENTAAPTDKKEEAPVSEPVKTET
APKPKKEASKQDNSPKPKKQNDTPANKQASRNQNNQNQNNQNKNQHRNQKNGNVEKGNKD
NRNRYREPDFEFDAIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKT
GDTVLGHVRPPKEGEKYFPLIKVSKINGQNPNVVRDRVSFEHLTPLFPQEKFNIAEKQST
ISTRIMDLFAPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDERPEEV
TDMQRNVRGEVIASTFDKEAHEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNT
VQPASGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFK
GTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDILLDDTTVQRMWVMRKYLADMNPVEAM
EFINERFKQTKNNEEFLISMNG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcacaattaaaagaaaaaaagctcgctgatttacaggagattgctaag
aaattgaacgttccaaagtttcgttcattaaaaaaattagatcttgtataccaaatatta
gatcagcaagctgcagaccctaaagcggttaaagcagctgtaacaccaacagaacctatt
gaaccagctaaaaatatagaagaaaaggacacaaaaacagcaaagcctgtgactagaaaa
cctagacaacgtgttcaaaaaccagttagaaatacccctcaaaaagcagaagaaaacact
gctgcaccaaccgataaaaaagaagaagctccagtttcagaaccagtgaaaactgaaaca
gctcctaaacccaaaaaagaagcttcaaaacaagacaatagcccgaaaccaaaaaaacaa
aacgatacgccggctaataaacaagcttcaagaaatcaaaataaccaaaatcagaacaat
caaaataaaaatcaacatagaaaccaaaaaaatggtaatgttgaaaaaggcaataaagac
aacagaaaccgttaccgtgagcctgatttcgaatttgatgccatcattgaaagtgaaggt
gttttagacatcatgcaagacggatatggttttttacgttcttccgattataactattta
tcatcaccagatgacatttatgtgtctcaatcacaaattagattgtttggtttaaaaaca
ggtgatacagttttaggtcatgtacgtccacctaaagagggtgaaaaatattttcctttg
attaaggtaagtaaaattaatggtcagaatccaaatgtcgttagagaccgtgtatcgttt
gaacacttaaccccgcttttcccacaagaaaaatttaatatagctgaaaaacaaagtacc
atttctacgcgaatcatggatttgtttgcgcctattggaaaaggacaacgtggtatgatt
gtttctcaaccaaaaacaggtaaaacaatgttattgaaggatgtggctaatgctattgct
gccaaccatcctgaagtttaccaaatgattttattaattgatgaacgtcctgaagaggtt
actgatatgcaacgtaacgttcgtggtgaagtcattgcttctactttcgacaaggaagca
catgagcatgtaaaaattgcaaacatcgtactagaaaaagcaaaacgcttagttgaatgt
ggccatgatgtagtgatcttattagattccataacacgtttggctcgtgcttacaatacc
gtacaaccagcttctggtaaaatattaagtggtggtgttgatgccaatgctttacacaaa
ccaaaacgtttctttggtgctgctcgtaatatcgagaatggtggttcattaaccattatt
gctaccgctctaacagaaacaggttctaaaatggatgaggttatttttgaagaatttaaa
ggaaccggtaacatggaacttcaattggatagaaagatttctaaccgtagaattttccct
gctatcgatttaacctcttcaagtacgcgtcgtgacgatattttattagatgacacaaca
gttcaacgtatgtgggtaatgcgtaagtatcttgccgacatgaacccagttgaagccatg
gaatttattaacgaacgcttcaaacagactaaaaacaatgaagagtttttaatttctatg
aacggataa
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