Leadbettera azotonutricia: TREAZ_1283
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Entry
TREAZ_1283 CDS
T01506
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
taz
Leadbettera azotonutricia
Pathway
taz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
taz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TREAZ_1283 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taz03021
]
TREAZ_1283 (rpoB)
03400 DNA repair and recombination proteins [BR:
taz03400
]
TREAZ_1283 (rpoB)
Enzymes [BR:
taz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TREAZ_1283 (rpoB)
Transcription machinery [BR:
taz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TREAZ_1283 (rpoB)
DNA repair and recombination proteins [BR:
taz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TREAZ_1283 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEF81727
UniProt:
F5YG21
LinkDB
All DBs
Position
1117146..1120781
Genome browser
AA seq
1211 aa
AA seq
DB search
MAKAKTITKRTYIGKEIQDVMELPTLIDIQTCSYERFLQWDKIRSNEKPNLQGLEEVFQS
IFPIESPNNDMRLDYEYYSLDTGNIKFNEQECKQKGLTYSVSLKARVNLYFVGTGEIRQK
DIYMGDIPIMTERGTFIINGAERVVVSQIHRSPGVIFSHEKGIYSSRIIPYRGSWLEFEI
DQKKELIYAKIDRKKRILGTIFLRALGYGSREEIIRAFYRVETLKVKDDRETREEFSGKV
LASAIWVVGNDPEDKENKKKLYRAGDKLHPHDVDELLANGVGSIEVIKFVDLENPDDSNP
KNLSLNSNMLLNCFEREEIKFVKEDPNRDEPSKSDAISAVYQVLQPGESITVEAADKDLS
SMFFSSRRYDLGKVGRYKLNKKFDYKPGLEDLTLTRQDIIATMKFLIKVYVGDENFDDID
HLGNRRVRSVGELMANSMKTAFSRMERIAKERMSLKETDTIKPQDLISIKPVVAAIKEFF
GSSQLSQFMDQVNPLAELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEG
PNIGLIVSLANYTRVNEYGFLETPYRRVVKKSMPNPQYNPKEEEGKNNLKTLDVSFTTKD
VEYLSAMDEDRYYIAQASAKLNKDGSFADDQISCRRQGDYTTRGPEDIEYMDVSPKQIIS
VSASLIPFLEHDDANRALMGSNMQRQAVPLVFPEAPRVGTGMEYKCAYDSGVLVKARRNG
VVVRVTSQEVIIKPDDGTEKIPEATPDGFDTYKLVKYQRTNQDTCYNQRPVVKLGEKIIA
GQVIADGPATKNAELALGRNILVGFMPWNGYNYEDSILISQRVVKEDMFTSIHIKEWPIE
VRETKLGPEKITRDIPNTSEKSLDNLDAEGIIKVGATVRSGDILVGKVTPKSETETTPEF
KLLNSIFGEKAKEVRDSSLRVPHGNEGTVIDIQRLSRKQEDDLNPGVEQVVKVVVATKRK
LREGDKMAGRHGNKGVVARILPEEDMPYMEDGTPLDLCLTPLGVPSRMNIGQLLETELGW
AGSTLDEWYSAPVFQSPTTEQIEEKLREAGLPVTSKAELRDGRTGDVFVNPIFCGIIYFL
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQEMLTI
KSDDMNGRSKVYEAIVKGEPSTTAGIPESFNVLVQELRGLALDLTIYDAKNKQIPLNERD
DEMITKSGSNF
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagcaaagaccattaccaagaggacgtacattggcaaggaaattcaggatgtt
atggagctgccgactctcatagatatccagacttgttcctatgaacgttttttgcagtgg
gacaaaatcaggagcaatgagaagccaaacctccagggcctggaagaagtttttcaatct
atcttccccatcgaaagccctaacaacgatatgcggctggattatgagtattactccctt
gatacaggcaacataaaattcaacgagcaggaatgcaagcaaaagggcctgacctattca
gtctccctcaaggcaagggtgaacctttactttgtcgggaccggcgaaattcgccagaaa
gatatttacatgggcgacatccccattatgacggaacgggggacctttattataaacggc
gccgagcgcgttgtggtttcacagattcaccgttcaccgggcgttatcttcagccatgag
aaaggaatttactcttccaggatcatcccctaccgggggtcctggctcgaatttgaaata
gatcaaaagaaagaactcatctacgccaaaatagacaggaagaagcgcatacttggaaca
atattcctccgtgccctgggctatggaagcagagaagaaattatccgggctttctatagg
gtcgagaccctgaaagtaaaggatgatagagagacgagggaagaattctccgggaaagtg
ctggcatccgcaatatgggtcgtggggaatgatcctgaagacaaggagaacaaaaaaaag
ctctaccgcgctggggacaagctccatccgcacgatgtggacgaacttttggccaatggc
gtagggtccatagaagttatcaaatttgtggatttggaaaacccggacgattccaacccc
aaaaacctctccctcaattcaaacatgctccttaattgttttgagcgggaagagataaaa
tttgtaaaggaagatcccaaccgggacgagccttccaaaagcgatgccatatccgcggtt
taccaggtgctccagcccggcgaatccatcactgtggaagcggccgataaagatctttca
agcatgttcttttcttcccgccgctatgatcttggcaaggtaggccgctataagctcaac
aagaaatttgactataagccgggccttgaagatttgacccttaccaggcaggacatcatt
gctaccatgaaattcctcatcaaggtttatgtgggggatgaaaattttgacgatattgac
cacctgggcaacaggcgcgtgcgttcggtaggggagctcatggcaaattccatgaagacc
gccttctcccgcatggagcgcattgcgaaagaacgcatgagcctcaaagagacggacacc
ataaagccccaggatcttatttccataaagccggtggttgcggcgattaaagaattcttt
ggttcaagccagctttcacagttcatggatcaggttaacccccttgccgagctgacccac
aagcgccgccttaacgcgcttggccccggcggtctttcgcgggacagggctggtttcgaa
gtccgcgatgtccactacacccattacggccgcatgtgccccattgagaccccggaaggt
ccgaatatcggactcattgtgtctttggcaaactacaccagggtaaacgaatatggtttt
ctggagaccccctaccgcagggtggtgaagaagtccatgcccaatccccaatacaatcct
aaagaggaagaaggcaagaacaacctaaaaaccctggatgtcagttttaccaccaaggac
gtggagtacctttcggccatggacgaggaccggtactacattgcccaggcatcggccaag
ctgaacaaggacgggtcctttgcggacgatcagatctcctgccgccgccagggcgattac
accacccgggggcctgaggatatcgagtatatggacgtatcgcccaagcagatcatttcg
gtctccgcttccctgatccccttcctggagcacgatgacgccaaccgggccctcatgggt
tccaatatgcagcgccaggcagtgcccttggttttccccgaggctccacgggtaggtacg
ggcatggaatacaagtgcgcctatgactcaggcgtccttgtcaaggcgaggagaaatggc
gttgtggtaagggtgacttcccaggaagttataattaagcccgatgacggcacggaaaag
atccctgaagccactcccgatggttttgacacgtacaaactggtgaagtaccagcgaacc
aatcaggacacctgctacaaccagcggcctgtagtgaagctgggcgaaaagatcatcgcc
gggcaggtaattgccgacgggccggccaccaaaaatgccgagcttgctttgggcaggaat
atcctcgtgggctttatgccctggaacgggtacaactacgaagactccatactcatttcc
cagcgtgttgtcaaggaagatatgtttacttccatacacatcaaggaatggcccatagaa
gtgcgggagacgaagctggggcccgagaagataacccgggatattcccaacacttccgaa
aagagcctcgacaacctcgatgctgaagggattataaaagtgggcgccacagtgcgttca
ggggatatattagtaggaaaagtaacacccaaaagcgaaaccgaaactaccccggaattc
aagctcctcaattccatattcggcgaaaaagccaaggaagtgcgggactcctcattgcgg
gtgccccatggcaacgaagggacggtcatcgacatccagcggctttcccgcaaacaggaa
gatgatcttaaccccggggttgaacaggtagtaaaagtggtagtcgccaccaagcgcaag
ctccgggaaggggataaaatggcgggccgccacggcaacaagggtgttgtggcccgtata
ctccccgaagaggatatgccgtacatggaagacggcacccccctggatctctgccttacc
cccctgggtgtcccctcccgtatgaacatcggccagcttcttgaaacagagcttggctgg
gcgggttccaccctggacgaatggtattccgccccggttttccagtctcccactacggag
cagatcgaggaaaaactcagggaagccggcttgcctgttaccagcaaggcggagctgagg
gacgggcgcacaggggacgtttttgtgaaccccattttctgcgggattatttacttcctc
aagcttcaccacctggtggacgacaagatgcatgcccgcagtaccggcccctactcgctg
gttacccagcagcccctgggcggcaaggcccagttcggcgggcagaggctcggcgaaatg
gaagtgtgggcgttggaagcttatggcgctgccaatacgctccaggaaatgctcactatc
aagtctgacgatatgaacgggcgttccaaggtttacgaagccattgtaaaaggcgagcct
tctactaccgcagggattcccgaatccttcaatgtactggtgcaggaactccggggattg
gccctggatctcaccatctacgatgccaaaaacaaacagatccccttgaacgaacgggac
gatgagatgattaccaagagcggatccaacttttag
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