Thermococcus barophilus: TERMP_00146
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Entry
TERMP_00146 CDS
T01377
Name
(GenBank) putative Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tba
Thermococcus barophilus
Pathway
tba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TERMP_00146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tba03019
]
TERMP_00146
Messenger RNA biogenesis [BR:
tba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TERMP_00146
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ADT83123
UniProt:
F0LHN9
LinkDB
All DBs
Position
113534..114859
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AA seq
441 aa
AA seq
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MINIYTLGGYEEVGKNMTAVEYNGEVVIIDMGIRLDRVLIHEDVEFQKMPSKELRKIGAI
PDDTPIRNKKVVAIAFSHGHLDHIGAIAKLAPHYPDVPIYGTSYTIKLAKSEVKSEQYFE
VKNPMYETQYGEIVQVSENLAIEFVQITHSIPHSSIVVVHTPEGAVVYACDYKFDNNSPL
GEKPDYKRLKEIGKEGVKVLIAESTRVAEQTKTPSEAVAKMLLEDFFYYDGMDEKGLIAT
TFASHIARLQELIEIANNIGRQAILVGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVQKV
LREVSQARENYLLIVTGHQGEPGAVLTRMANGELYNIGKDDTVVFSAGVIPNPLNIAQRY
ALETKLKMKGVRMVKNLHVSGHASREDHRYLIKMLNPENIVPAHGEFRMLTHYAELAEEE
GYLIGRDVFVSRNGYKVEISR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgataaatatttacactttaggcggttatgaggaagtaggtaagaacatgacggctgtt
gaatacaacggggaagttgtgataatagacatgggcattcgcttggatagggttctcatt
catgaagatgttgaatttcagaaaatgccttcaaaggagctgagaaaaataggtgcaatt
cctgatgacactccaattagaaataagaaagtcgttgcaattgccttttctcacggtcat
ctcgaccatatcggtgcgatagcaaagttggcccctcactatccagacgttccaatttac
ggaacttcatacaccataaagcttgcaaagagcgaagttaaaagtgagcagtattttgaa
gttaaaaacccaatgtatgaaactcagtatggtgaaattgtccaagttagtgaaaatttg
gcaattgaatttgttcaaatcactcattcaatccctcattcttcaatagttgttgtccac
actccagaaggtgctgtggtttatgcatgcgattacaaatttgacaacaacagtcctctt
ggggaaaaacctgactataagagacttaaagaaattggcaaagagggagttaaggtttta
atagcagaatcaacgcgtgttgctgagcagacaaagactccaagtgaagcggttgcaaaa
atgctccttgaagactttttctactacgacggaatggatgaaaaagggttgatagcgaca
acttttgcttctcatatagcccgccttcaggagcttatagagatagccaacaacatagga
cggcaagctattttggttggccgttctttggcaaagtacaccggcatagctaaacaattg
gggttaataaaaatgaaaggatcgagagttctcaggagtccaaatgcagttcaaaaagtt
ctcagagaagtctctcaggcgagggaaaattatctcttaattgtaactggacatcaagga
gaaccaggggcggttttaacaagaatggcaaatggggagctttacaatataggaaaggat
gataccgttgttttctccgcgggggttattccaaaccctctaaacatagctcagaggtat
gcgctggaaaccaaattgaagatgaaaggtgttagaatggtaaagaatcttcacgtttct
ggtcatgcctcaagagaggatcaccgttatctgattaagatgctcaaccctgaaaacatc
gttccggctcatggagagtttagaatgctcactcattacgctgaacttgcagaagaggaa
ggatacctaattggtagagatgtgtttgtctcaagaaatggatataaagttgaaatttcg
aggtga
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