Thermococcus barophilus: TERMP_00163
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Entry
TERMP_00163 CDS
T01377
Name
(GenBank) exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
tba
Thermococcus barophilus
Pathway
tba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TERMP_00163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tba03019
]
TERMP_00163
Messenger RNA biogenesis [BR:
tba03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TERMP_00163
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TERMP_00163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ADT83140
UniProt:
F0LHQ6
LinkDB
All DBs
Position
130343..131083
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AA seq
246 aa
AA seq
DB search
MGKPEDIKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPRE
IHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAIILELFPRT
AIDVFIEVLQADAGTRVAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDN
YGEADVPVAIMPIKNDITLLQMDGYLTREEFLEAVRLAIKGAKAVYQKQREALKEKYIKI
AQEVGE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcctgaagatataaagcttattgatgagaatggaagaagaattgatggcaga
aaaaagtatgagctcagaccaattaaaatggaagttggtgttttgaagaatgctgatggt
tctgcttatatagaatgggggaagaacaaaattctcgccgcggtttatgggccaagagaa
attcatccaaagcacttacagagaccagatagagcaatattaagagttagatacaacatg
gctccctttagtgttgaagaaagaaaaaagcccggaccagacaggaggagtgttgaaata
agcaaagtcatcagaggggcattggagccggcaatcatactggagcttttcccaagaact
gcaattgatgttttcattgaggttctccaggcagatgcaggaacgagagttgctggaatt
actgccgcttctttggcactggcagatgcgggaattcctatgaaagacttagtttccgca
tgtgctgctggaaagatcgagggacagattgtccttgacttgaacaaggaggaggacaac
tacggagaggctgatgtcccagttgcaataatgccgataaagaacgatataacccttctg
cagatggacggttacttgacaagagaggagttccttgaggctgtgaggcttgcaataaaa
ggtgcaaaggcagtctatcaaaaacagagagaggcattgaaagaaaaatacatcaagata
gcccaggaggtaggtgagtaa
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